Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23i21
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...   174   1e-44
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    66   4e-12
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    32   0.079
SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr 3||...    29   0.74 
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    29   0.98 
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    27   2.3  
SPCC1682.05c |||signal recognition particle subunit |Schizosacch...    27   3.0  
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    26   5.2  
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    26   5.2  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    26   6.9  
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    25   9.1  

>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score =  174 bits (423), Expect = 1e-44
 Identities = 86/214 (40%), Positives = 133/214 (62%), Gaps = 12/214 (5%)
 Frame = +3

Query: 105 MPKSKRDKKVSLTKTNKKGLVHKQKVIEEIRNSLSKYEHIFLFTINNMRNTKLKDLRNDW 284
           MPKS+R K ++L +T KKG   K  +   ++ SL  ++++++F + NMRNT LK +R+DW
Sbjct: 1   MPKSRRSKVLTLAQTEKKGHEGKAALFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDW 60

Query: 285 KDSRFFFGKNKVMAIALGKTKSDEIEEQLNLLSKKLKGQCGLLMTNRDVPDVLNWFKSYQ 464
           K SR F GK KVMA ALG T  +E  E ++ L+K L G  GLL TN    +V+ +F+S+ 
Sbjct: 61  KGSRIFMGKTKVMAKALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPDEVIGYFESFV 120

Query: 465 ASEYARAGFIATKDVLLPKGPLAD------------FSHTIEPHLRRLGLPTSLEKGVIN 608
            +++ARAG +A    ++P GP+               +HT+EP +R+LG+PT L+ GV+ 
Sbjct: 121 QNDFARAGAVAPFTHVIPAGPVYSRAGQIPVEDDILLTHTLEPQVRQLGMPTVLKNGVVT 180

Query: 609 LIKEYQVCKKGAPLTPEQASILKLIGIEMADFKL 710
           L+ ++ +C +G  L   Q  +LKL GI  A+FK+
Sbjct: 181 LLADFPLCTEGQQLDSRQTRLLKLFGITAAEFKV 214


>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 66.5 bits (155), Expect = 4e-12
 Identities = 43/174 (24%), Positives = 82/174 (47%), Gaps = 1/174 (0%)
 Frame = +3

Query: 171 KQKVIEEIRNSLSKYEHIFLFTINNMRNTKLKDLRNDWKDS-RFFFGKNKVMAIALGKTK 347
           K +  E++R+   KY  +F+  I+N+ + ++  +R   + +     GKN ++  A+    
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67

Query: 348 SDEIEEQLNLLSKKLKGQCGLLMTNRDVPDVLNWFKSYQASEYARAGFIATKDVLLPKGP 527
           +D  E  L  L   ++G  G + TN D+ +V     +   +  AR   IA  DV +P G 
Sbjct: 68  NDMPE--LERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGN 125

Query: 528 LADFSHTIEPHLRRLGLPTSLEKGVINLIKEYQVCKKGAPLTPEQASILKLIGI 689
                       + LG+PT + +G I +  +  +  K A + P +A++L ++ I
Sbjct: 126 TG-MEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNI 178


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 4924

 Score = 32.3 bits (70), Expect = 0.079
 Identities = 28/98 (28%), Positives = 44/98 (44%)
 Frame = -3

Query: 310 FPKKNLESFQSFRRSFNFVFLMLLMVNKNMCSYLLSEFLISSMTFCLCTKPFLLVFVSDT 131
           FP+  L S ++ R++    F      + +  S+  SE L++++   +C K F  V     
Sbjct: 684 FPR--LASGKTDRKALKIQFSASDKHSTDFSSFNQSELLVANVLHEICEKRFNSVVSISR 741

Query: 130 FLSLFDFGIFVLLFYYGKDKIYNLISSAISKITCTGFV 17
           F S+FD G+  L   Y   KI +L   A   I  T  V
Sbjct: 742 FSSIFDLGLDSLDIVYFVRKIRSLGFEANPSIVLTSKV 779


>SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 265

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
 Frame = -3

Query: 379 NRFSCSSISSLLV-LPRAIAITLFFPKKNLESFQSFRRSFNFVFLMLLMVNKNMCSYLLS 203
           N F+ S+ S  LV L   ++I+L F +   E++Q  R + +F      +V   +C Y L 
Sbjct: 13  NIFTHSAPSEKLVGLQNRLSISLRFIEYAFETYQPERLAMSFNGGKDCLVLFLLCIYYLK 72

Query: 202 EFLISSMTFCLCTKPFLLVFVSDTFLSLFDF 110
           E         L   PF+ V   D F  + DF
Sbjct: 73  EKYKEQAQAKLSNIPFVFVRPRDEFPEMDDF 103


>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -1

Query: 396 LLIFLITDLVALLFHHSWSYQEQ*PLLYFFQKRIWNPSNHSVGPLILYFS 247
           L+ FL   +V    H  W + EQ  + YF++   W  S     PL L+ S
Sbjct: 237 LMDFLWDPVVYGQKHMDWPHDEQNAIEYFYENNAWLRSGMGFVPLRLFNS 286


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -3

Query: 397 PFNFFDNRFSCSSISSL--LVLPRAIAITLFFPKKNLESFQSFRRSF 263
           P N+FDN ++ +SISS   ++LP  I+   F P   L      R+SF
Sbjct: 604 PANYFDNVYTPNSISSFSEVLLPNLISTLNFAP---LSLIPLLRKSF 647


>SPCC1682.05c |||signal recognition particle subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 430 TSLFVISNPH*PFNFFDNRFSCSSISSL-LVLPRAIAITLF 311
           TSL +I+  + P NF D+R  C ++S++ L L       LF
Sbjct: 9   TSLVIIAFRYLPNNFNDSRLGCDNLSTVGLCLKNGTGEVLF 49


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -3

Query: 214 YLLSEFLISSMTFCLCTKPFLLVFVSDTFLSLFDFGIFVLLFYYGKDKI 68
           Y++S +   S +F LC K    V      +    FG  V LF+  K ++
Sbjct: 63  YIISGYRPPSFSFYLCVKSIFHVHNESVNIWTHLFGAIVFLFFIFKSEL 111


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +3

Query: 408 LLMTNRDVPDVLNWFKSYQASEYARAGFIATKDVLLPKGPLADFSHTIEPH 560
           +L+    VPD++NW ++  A  +   G  A    L+ +  L   S   EP+
Sbjct: 345 VLLFKSFVPDIINWREALFAGHFGPIGVGALYTCLVARAELEVHSTVPEPN 395


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +3

Query: 429 VPDVLNWFKSYQASEYARAGFIATKDVLLPKGPLADFSHTIE 554
           + + L   +SY   +Y+R+  + T    LP+  +  F+++IE
Sbjct: 30  ISNYLKPVRSYPYIKYSRSSLLLTASTTLPENFVISFTNSIE 71


>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 489 FIATKDV-LLPKGPLADFSHTIEPHLRRLGLP 581
           F   KDV L+  GP       IE H RR+G+P
Sbjct: 65  FALDKDVNLVIPGPELPLVEGIEGHFRRVGIP 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,239,660
Number of Sequences: 5004
Number of extensions: 70084
Number of successful extensions: 241
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)