Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23i14
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    25   0.91 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.5  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 10/46 (21%), Positives = 21/46 (45%)
 Frame = -3

Query: 637 FGKEVATKIFIEAFEYSYTNTNAISMDKTDEFDFIKQPTLKSLPDA 500
           FG +   +  +++ EY +T      +D+     F+  P  K +P +
Sbjct: 48  FGSDERRQAAMQSGEYDHTKNYPFDVDQWRGMTFVTVPRYKGVPSS 93


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -3

Query: 637 FGKEVATKIFIEAFEYSYTNTNAISMDKTDEFDFI 533
           FG +   +  I++ EY+Y N   I +D+ +   F+
Sbjct: 45  FGSDEKRQAAIQSGEYNYKNNVPIDVDRWNGKTFV 79


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/40 (25%), Positives = 15/40 (37%)
 Frame = +1

Query: 13  YETDGGRHYIKSDGRSHRQQYRRYHPSQQLAD*RRSTWPI 132
           Y T G  H+    G SH      +H S       + + P+
Sbjct: 409 YSTPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQHSTPL 448


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 254 VTVQKQKYETTLLENYDIRNRN 319
           V V++   E  +L+N+DI+++N
Sbjct: 580 VDVEEILGEAKVLQNFDIKDKN 601


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,691
Number of Sequences: 438
Number of extensions: 2733
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)