Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23i10
         (342 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    27   0.80 
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   1.1  
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces...    26   1.8  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    26   1.8  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    25   3.2  
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    24   5.6  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    24   7.5  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    24   7.5  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    24   7.5  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    24   7.5  
SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo...    23   9.8  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    23   9.8  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    23   9.8  

>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 27.1 bits (57), Expect = 0.80
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 177 KDKFIINKLTNADALQHLKFLKVNYNKVVDEH 272
           K+ ++I+ L     L+H  ++K N  K+VD+H
Sbjct: 443 KNIYVISTLKRPVPLEHYLWVKQNMFKIVDQH 474


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
 Frame = +3

Query: 24  DARVIFGTIIA--LPEITH---TITHVTERDRSARVYKN-------MSVLDAVEWIANRA 167
           D R +F  + +  LP + H   T+T+V  RD S  +Y++       + +  +   +    
Sbjct: 355 DRRPLFTIVESQILPCVLHSYETLTNVFHRDDSKHLYESAVDHGRRLIMKFSDSELHTFL 414

Query: 168 FECKDKFIINKLTNADALQHLKFLKVNYN 254
           F C +K + N   N+D+ + +KF+  + N
Sbjct: 415 FHCVNKIVANTTENSDSAEAVKFILDSQN 443


>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 115 YIKICPFWTLWSGLQTERLNAK 180
           Y     FW LW+G+ T R  AK
Sbjct: 546 YESATAFWALWAGVATPRQAAK 567


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 225 HLKFLKVNYNKVVDEHVSTSQYL 293
           + K L  +YNKV  EHVS S+ L
Sbjct: 185 NFKSLMTSYNKVNGEHVSQSRIL 207


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 135 LDAVEWIANRAFECKDKFIINKLTNADAL 221
           L ++ W+ NR F+ ++K    K  N+D L
Sbjct: 569 LASLGWVENRIFQMEEKLDTIKKKNSDVL 597


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 168 FECKDKFIINKLTNADA 218
           F+C+DKF+I  +   DA
Sbjct: 77  FKCRDKFLIQSMAIGDA 93


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 115 YIKICPFWTLWSGLQT 162
           +I IC FW  WSG ++
Sbjct: 408 FIPICLFWFGWSGRES 423


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 321 FIYTLILFTTNIDSLKRVRQQLCYNLLSKISNVAKRPR 208
           F +  ILF   +DSLK  R  L  ++L K+ N  + P+
Sbjct: 312 FDFCFILFRDCLDSLKDCRIHLLESML-KLINKKENPK 348


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -2

Query: 200 FVDNKFVFAFKRSVCNPLHSVQNGHIFIYTSGAV 99
           FV+N+  + F  +  NP+ + + G   ++T+G V
Sbjct: 91  FVNNENNYQFSTAPLNPIDACRVGERKVFTTGNV 124


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 6/32 (18%)
 Frame = -2

Query: 269 FVNNFVIIYFQK------FQMLQSVRVGQFVD 192
           +V+N  I+ FQ+      F  ++ + VGQFVD
Sbjct: 463 YVDNLYILSFQQSVLNQQFLRIEDIEVGQFVD 494


>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
           Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 327 YSFIYTLILFTTNIDSLKRVRQQLCYNLLSKI 232
           YS+ Y      T++D  K+    L Y LLS+I
Sbjct: 226 YSYFYEAYEGFTSLDDDKKALSSLKYMLLSQI 257


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +1

Query: 121 KICPFWTL--WSGLQTERLNAKTNLLSTN 201
           K CP   +  +SG Q+ER+N +  L+ T+
Sbjct: 483 KFCPSLRVESYSGTQSERINKRYYLMDTD 511


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 201  LTNADALQHLKFLKVNYNKVVDEH 272
            L+N +   +LK LKV + +V D H
Sbjct: 935  LSNPNTPYYLKLLKVLFGQVPDRH 958


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,245,515
Number of Sequences: 5004
Number of extensions: 22376
Number of successful extensions: 58
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)