Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23i10
(342 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 28 2.2
04_04_0051 - 22371490-22371658,22372333-22372778,22373880-223740... 28 2.2
04_04_1374 - 33028790-33028951,33029033-33029087,33029402-330294... 27 3.9
04_03_0505 + 16628145-16628217,16628612-16628767,16628964-166291... 27 3.9
10_08_0083 - 14715517-14715595,14716022-14716150,14716280-147164... 27 5.1
11_06_0554 - 24930437-24930552,24930878-24931079,24931164-249312... 26 6.7
02_02_0641 + 12566416-12566599,12567132-12567327,12568319-125684... 26 6.7
04_03_0313 + 14233049-14234362,14234558-14235523 26 8.9
01_01_0861 + 6710815-6713142 26 8.9
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 180 DKFIINKLTNADALQHLKFLKVNYNKVVDEHVSTSQYLS*IKLM 311
D+FII ++T + LKF ++Y K + E +ST S K++
Sbjct: 1590 DRFIIKQVTKTELESFLKF-GLDYFKYLSESISTGSPTSLAKIL 1632
>04_04_0051 -
22371490-22371658,22372333-22372778,22373880-22374054,
22374134-22374240,22374358-22374646,22374942-22375075,
22375228-22375423,22375611-22375719,22375839-22375965
Length = 583
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 82 LMLQNVTAPLVYIKICPFWTLWSGLQTERLNAKTNL 189
++L NV L+ +WT++S ++TER+NA L
Sbjct: 54 MVLGNVGVILLLFPAHVWWTIYSLIKTERINAGLKL 89
>04_04_1374 -
33028790-33028951,33029033-33029087,33029402-33029466,
33029558-33029701,33029825-33029878,33029971-33030220,
33030340-33030446,33031206-33031216,33032682-33032796,
33032897-33033005,33033088-33033203,33033288-33033647
Length = 515
Score = 27.1 bits (57), Expect = 3.9
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +3
Query: 75 TITHVTERDRSARVYKNMSVLDAVEWIANRAFECKDKFIINKLTNADALQ 224
T+ + ER+R+ K+ ++ D E I + F K + I K NAD L+
Sbjct: 437 TLKEIEERERAQLKLKDDTIRDLEEQIKDFKFSIKLQKSIEKNKNADDLK 486
>04_03_0505 +
16628145-16628217,16628612-16628767,16628964-16629125,
16629699-16629842,16629952-16630028,16630710-16630874,
16630988-16631341
Length = 376
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 189 IINKLTNADALQHLKFLKVNYNKVVDEHVSTS 284
IINK+TN+D +Q K K ++VD S S
Sbjct: 344 IINKMTNSDGMQATKGSKAAVFRLVDYSESDS 375
>10_08_0083 -
14715517-14715595,14716022-14716150,14716280-14716487,
14716789-14716852,14717727-14717768,14718175-14718279,
14718601-14718695,14718789-14718882
Length = 271
Score = 26.6 bits (56), Expect = 5.1
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +2
Query: 29 ACNFRDHYRAARDNTH--NHSCYRT*PLRSCI 118
AC F HY++ + +T+ N C +T P R+ I
Sbjct: 65 ACFFHSHYKSGQSSTYQKNGLCLKTFPNRAII 96
>11_06_0554 -
24930437-24930552,24930878-24931079,24931164-24931269,
24931357-24931599,24932398-24932484,24932695-24932825,
24933177-24933183,24933695-24933789
Length = 328
Score = 26.2 bits (55), Expect = 6.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -2
Query: 200 FVDNKFVFAFKRSVCNPLHSVQNGHIF 120
F + K +F K C PL + +NGH +
Sbjct: 268 FAEVKMIFRRKYYFCCPLEAPENGHCY 294
>02_02_0641 +
12566416-12566599,12567132-12567327,12568319-12568406,
12569279-12569330,12569423-12569765,12571282-12571684,
12571770-12571841,12572632-12572817,12573174-12573239,
12574802-12575174,12575917-12576014,12578179-12578305,
12578734-12578924,12579265-12579540,12579837-12579866
Length = 894
Score = 26.2 bits (55), Expect = 6.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 177 KDKFIINKLTNADALQHLKFLKVNYNKVVDEH 272
K K N+ TN DALQ + L V+Y V H
Sbjct: 372 KPKLECNEETNIDALQEDETLSVDYKNDVSIH 403
>04_03_0313 + 14233049-14234362,14234558-14235523
Length = 759
Score = 25.8 bits (54), Expect = 8.9
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = -1
Query: 117 IHERSGHVL*HE*LCVLSLAAR*WSRKLHARRNVNVYI 4
IH+ + V +E L + L++R RKLHA R+++V +
Sbjct: 486 IHDMAQSVSVNECLLLQDLSSRNEGRKLHAVRHMSVQV 523
>01_01_0861 + 6710815-6713142
Length = 775
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 128 HIFIYTSGAVTFCNMSDCVCYLWQRDNGPENY 33
++ +Y G VT + DC LW + PEN+
Sbjct: 259 YVQLYPDGNVTAAKLGDCGSVLW---SAPENW 287
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,160,456
Number of Sequences: 37544
Number of extensions: 121321
Number of successful extensions: 374
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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