Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23i10
(342 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC150249-1|AAI50250.1| 1589|Homo sapiens sterile alpha motif dom... 32 0.54
BC132775-1|AAI32776.1| 1589|Homo sapiens sterile alpha motif dom... 32 0.54
BC132773-1|AAI32774.1| 1589|Homo sapiens sterile alpha motif dom... 32 0.54
AF445355-1|AAQ04637.1| 1589|Homo sapiens OEF1 protein. 32 0.54
AB095925-1|BAC23101.1| 1595|Homo sapiens KIAA2004 protein protein. 32 0.54
L00352-1|AAA56833.1| 860|Homo sapiens low density lipoprotein r... 29 2.9
BT007361-1|AAP36025.1| 860|Homo sapiens low density lipoprotein... 29 2.9
BC014514-1|AAH14514.1| 860|Homo sapiens low density lipoprotein... 29 2.9
AY324609-1|AAP72971.1| 860|Homo sapiens low density lipoprotein... 29 2.9
AY114155-1|AAM56036.1| 860|Homo sapiens low density lipoprotein... 29 2.9
AF217403-1|AAF24515.1| 837|Homo sapiens low density lipoprotein... 29 2.9
AB209409-1|BAD92646.1| 870|Homo sapiens low density lipoprotein... 29 2.9
BC110867-1|AAI10868.1| 314|Homo sapiens CDH24 protein protein. 28 6.6
>BC150249-1|AAI50250.1| 1589|Homo sapiens sterile alpha motif domain
containing 9 protein.
Length = 1589
Score = 31.9 bits (69), Expect = 0.54
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +3
Query: 99 DRSARVYKNMSVLDAVEWIANRAFECKDKFIINKLTNADALQHLKFLKVNYNKVVDEHV 275
++SAR+ +++V+ + RAFE K K I + N + +K N+NK E+V
Sbjct: 842 EKSARIPDSIAVIQQLSPKEQRAFELKLKEIKEQHKNFEDFYSFMIMKTNFNKEYIENV 900
>BC132775-1|AAI32776.1| 1589|Homo sapiens sterile alpha motif domain
containing 9 protein.
Length = 1589
Score = 31.9 bits (69), Expect = 0.54
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +3
Query: 99 DRSARVYKNMSVLDAVEWIANRAFECKDKFIINKLTNADALQHLKFLKVNYNKVVDEHV 275
++SAR+ +++V+ + RAFE K K I + N + +K N+NK E+V
Sbjct: 842 EKSARIPDSIAVIQQLSPKEQRAFELKLKEIKEQHKNFEDFYSFMIMKTNFNKEYIENV 900
>BC132773-1|AAI32774.1| 1589|Homo sapiens sterile alpha motif domain
containing 9 protein.
Length = 1589
Score = 31.9 bits (69), Expect = 0.54
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +3
Query: 99 DRSARVYKNMSVLDAVEWIANRAFECKDKFIINKLTNADALQHLKFLKVNYNKVVDEHV 275
++SAR+ +++V+ + RAFE K K I + N + +K N+NK E+V
Sbjct: 842 EKSARIPDSIAVIQQLSPKEQRAFELKLKEIKEQHKNFEDFYSFMIMKTNFNKEYIENV 900
>AF445355-1|AAQ04637.1| 1589|Homo sapiens OEF1 protein.
Length = 1589
Score = 31.9 bits (69), Expect = 0.54
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +3
Query: 99 DRSARVYKNMSVLDAVEWIANRAFECKDKFIINKLTNADALQHLKFLKVNYNKVVDEHV 275
++SAR+ +++V+ + RAFE K K I + N + +K N+NK E+V
Sbjct: 842 EKSARIPDSIAVIQQLSPKEQRAFELKLKEIKEQHKNFEDFYSFMIMKTNFNKEYIENV 900
>AB095925-1|BAC23101.1| 1595|Homo sapiens KIAA2004 protein protein.
Length = 1595
Score = 31.9 bits (69), Expect = 0.54
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +3
Query: 99 DRSARVYKNMSVLDAVEWIANRAFECKDKFIINKLTNADALQHLKFLKVNYNKVVDEHV 275
++SAR+ +++V+ + RAFE K K I + N + +K N+NK E+V
Sbjct: 848 EKSARIPDSIAVIQQLSPKEQRAFELKLKEIKEQHKNFEDFYSFMIMKTNFNKEYIENV 906
>L00352-1|AAA56833.1| 860|Homo sapiens low density lipoprotein
receptor protein.
Length = 860
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 119 IYTSGAVTF-CNMSDCVCYLWQRDNGPE 39
+ T G +F CN S C+ LW DN P+
Sbjct: 145 VLTCGPASFQCNSSTCIPQLWACDNDPD 172
>BT007361-1|AAP36025.1| 860|Homo sapiens low density lipoprotein
receptor (familial hypercholesterolemia) protein.
Length = 860
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 119 IYTSGAVTF-CNMSDCVCYLWQRDNGPE 39
+ T G +F CN S C+ LW DN P+
Sbjct: 145 VLTCGPASFQCNSSTCIPQLWACDNDPD 172
>BC014514-1|AAH14514.1| 860|Homo sapiens low density lipoprotein
receptor (familial hypercholesterolemia) protein.
Length = 860
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 119 IYTSGAVTF-CNMSDCVCYLWQRDNGPE 39
+ T G +F CN S C+ LW DN P+
Sbjct: 145 VLTCGPASFQCNSSTCIPQLWACDNDPD 172
>AY324609-1|AAP72971.1| 860|Homo sapiens low density lipoprotein
receptor protein.
Length = 860
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 119 IYTSGAVTF-CNMSDCVCYLWQRDNGPE 39
+ T G +F CN S C+ LW DN P+
Sbjct: 145 VLTCGPASFQCNSSTCIPQLWACDNDPD 172
>AY114155-1|AAM56036.1| 860|Homo sapiens low density lipoprotein
receptor protein.
Length = 860
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 119 IYTSGAVTF-CNMSDCVCYLWQRDNGPE 39
+ T G +F CN S C+ LW DN P+
Sbjct: 145 VLTCGPASFQCNSSTCIPQLWACDNDPD 172
>AF217403-1|AAF24515.1| 837|Homo sapiens low density lipoprotein
receptor protein.
Length = 837
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 119 IYTSGAVTF-CNMSDCVCYLWQRDNGPE 39
+ T G +F CN S C+ LW DN P+
Sbjct: 122 VLTCGPASFQCNSSTCIPQLWACDNDPD 149
>AB209409-1|BAD92646.1| 870|Homo sapiens low density lipoprotein
receptor precursor variant protein.
Length = 870
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 119 IYTSGAVTF-CNMSDCVCYLWQRDNGPE 39
+ T G +F CN S C+ LW DN P+
Sbjct: 157 VLTCGPASFQCNSSTCIPQLWACDNDPD 184
>BC110867-1|AAI10868.1| 314|Homo sapiens CDH24 protein protein.
Length = 314
Score = 28.3 bits (60), Expect = 6.6
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +3
Query: 42 GTIIALPEITHTITHVTER-DRSARVYKNMSVLDAVEWIANRAFECKDKFIINKLTNADA 218
GT+ + E T I HVT+ DR + + + + AV+ +NR E +FII +T A
Sbjct: 89 GTVFVIDEATGNI-HVTKSLDREEKA-QYVLLAQAVDRASNRPLEPPSEFIIIIITCVGA 146
Query: 219 LQHLKFLKV 245
L L L V
Sbjct: 147 LLALVVLFV 155
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,793,742
Number of Sequences: 237096
Number of extensions: 699751
Number of successful extensions: 1407
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1407
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1910415606
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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