Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23i10
         (342 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   3.1  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   3.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   3.1  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   5.4  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   5.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   7.2  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    20   9.5  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    20   9.5  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 27  ARVIFGTIIALPEITHTITHVTERDRSARVYKNMS 131
           A+ I G   +LP + H+ +     +R  +VY+ ++
Sbjct: 475 AKCIIGKDYSLPMVNHSKSSRINIERMKQVYQQLN 509


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 149 LHSVQNGHIFIYTSGAVTFCNMSDCVCYLW 60
           LH++     F   +  VTF  MS    YLW
Sbjct: 84  LHNIWRPDCFFKNAKKVTFHEMSIPNHYLW 113


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +2

Query: 23  RRACNFRDHYRAARDNTHNHSC 88
           R+  ++ D+   + +NT N SC
Sbjct: 171 RKNSDYLDNQEVSMENTENKSC 192


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 118 IKICPFWTLWSGL 156
           +KI P +T+W  L
Sbjct: 306 VKISPLFTIWGSL 318


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 118 IKICPFWTLWSGL 156
           +KI P +T+W  L
Sbjct: 56  VKISPLFTIWGSL 68


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 210 ADALQHLKFLKVNYNKVVDEH 272
           +D +  L+  K N +KV+D+H
Sbjct: 345 SDRVVALEAEKKNLSKVIDQH 365



 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 53 DNGPENYTRVV 21
          D GP+NYT  V
Sbjct: 58 DKGPKNYTTPV 68


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 147 PQRPKRTYFYIHERSGHVL 91
           P     TY YI + SG+ L
Sbjct: 181 PNNCDNTYAYISDLSGYAL 199


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 6   YKRSRYDARVIFGTI 50
           YK S YD  + FG +
Sbjct: 70  YKNSIYDVSMTFGPV 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,781
Number of Sequences: 438
Number of extensions: 1643
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)