Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23i05
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    28   1.6  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    27   2.2  
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      27   3.8  
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    26   5.0  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    25   8.8  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    25   8.8  
SPAC607.05 |rpn9||19S proteasome regulatory subunit Rpn9|Schizos...    25   8.8  

>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 430 ELDERALDALKEFPSDGALSVLGQFLDS-NLEHVSNKS 540
           EL+E  LDAL++   D A SVL +   S N E +   S
Sbjct: 259 ELNEEQLDALRKKDKDTAASVLAELFGSENTEEIDTVS 296


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 435 GRACSRCLKRISIRRC 482
           GR CS CLKR +I+ C
Sbjct: 36  GRPCSNCLKRSTIQSC 51


>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 26/119 (21%), Positives = 48/119 (40%)
 Frame = +1

Query: 280 NGEISYDEVAGKDSDVGRTEDYHKLIEYGLDPKVAAKLDDIYKTGKLAHAELDERALDAL 459
           N E+  D+   +D +   ++  ++ IE   D   A  LD   +  +++     +R    L
Sbjct: 105 NKEVLNDDSDDEDDNGKYSKLRYEDIEGQEDTNQANDLDADEEGSEISVPSSPKRMSFNL 164

Query: 460 KEFPSDGALSVLGQFLDSNLEHVSNKSAFLCGVMKTYRIASPANSTKNLLKSHHSTRVN 636
           KE   +G     G F+  N +  S   A+L G +   +  + A   +   K   + R N
Sbjct: 165 KEDMEEGDFDENGNFIRKNYDPESQYDAWLNGSVSNKKSIAAAREAEQKRKEMENRRRN 223


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 61  PKIVFISNHRNSITRAFAF*NSPSPGWNEECTI 159
           PK+ +I NHR      +   N+P P WN E  I
Sbjct: 105 PKVYWIFNHRR-----WCLENAPYPNWNYEMMI 132


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = +1

Query: 442 RALDALKEFPSDGALSVLG-QFLDSNLEHVSNKSAFLCGVMKTYRIASPANSTKNLLKSH 618
           +A+  + +  SD +L VLG   L   L +  N + ++   M    +    NS +N ++ H
Sbjct: 319 QAVRTILDLNSDSSLRVLGVNILAKFLGNRDNNTRYVALNM----LKLVVNSEENAVQRH 374

Query: 619 HSTRVNALND 648
            ST +  LND
Sbjct: 375 RSTILACLND 384


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -2

Query: 529 IHVRDLNLKIVQEHLKHRRMEILLRHLEHARPTLRALAFQSYKCR 395
           I +R ++L+  +E  +H  +    R++ H +  L  +AF S+K R
Sbjct: 347 IPIRCIHLQSSEELARHNNV---FRYIHHNQKQLPEIAFNSFKSR 388


>SPAC607.05 |rpn9||19S proteasome regulatory subunit
           Rpn9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 349 KLIEYGLDPKVAAKLDDIYKTGKL 420
           +L+E  +D  VAA L DIY  G+L
Sbjct: 198 ELVERAVDLSVAAILGDIYNFGEL 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,204,687
Number of Sequences: 5004
Number of extensions: 68581
Number of successful extensions: 205
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)