Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23i05
         (752 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1337 - 26238506-26238737,26239728-26240703,26241266-26242802     36   0.035
12_02_0871 + 23865343-23866016,23866122-23866170,23866276-238663...    29   3.0  
09_02_0224 - 5984128-5984923,5985667-5986718,5986800-5987776,598...    29   4.0  
12_01_0231 + 1744323-1745276,1745516-1746193                           28   6.9  
11_06_0553 - 24920428-24921057,24921149-24921276,24921372-249214...    28   9.2  
01_06_0514 + 29955129-29955796,29955903-29956023                       28   9.2  

>08_02_1337 - 26238506-26238737,26239728-26240703,26241266-26242802
          Length = 914

 Score = 35.9 bits (79), Expect = 0.035
 Identities = 20/66 (30%), Positives = 34/66 (51%)
 Frame = +1

Query: 424 HAELDERALDALKEFPSDGALSVLGQFLDSNLEHVSNKSAFLCGVMKTYRIASPANSTKN 603
           HA+L+E  + AL   P      +  + LD ++ ++  +  F CG  +  RI S  +S+KN
Sbjct: 117 HADLEEHCVGALLGEPETLYFFICERLLDLDVSNMQ-RGDFSCGKEEIDRIESDVSSSKN 175

Query: 604 LLKSHH 621
            +  HH
Sbjct: 176 AVVCHH 181


>12_02_0871 +
           23865343-23866016,23866122-23866170,23866276-23866356,
           23866599-23866718,23866957-23867055,23867135-23867194,
           23867316-23867410,23867483-23867508,23869212-23869285,
           23870194-23870259,23871027-23871099,23871585-23871622,
           23873758-23873871,23876079-23876195,23876288-23876368,
           23876468-23876536,23876631-23876669,23876809-23876973,
           23877380-23877484,23877569-23877637,23877754-23877816,
           23877903-23878021,23878124-23878348,23878409-23878610
          Length = 940

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
 Frame = +1

Query: 283 GEISYDEVAGKD---SDVGRTEDYHKLIEYGLDPKVAAKLDDIYKTGKLAHAELDERALD 453
           G  SYD  A      ++V  T+ Y   +   L   V   L  I +       ++D   + 
Sbjct: 664 GHDSYDRQAKAPRLYNEVSDTDPYEAAV-VSLPSAVKELLLRILRLRIGTRYDIDIHCIR 722

Query: 454 ALKEFPSDGALSVLGQFLDSNLEHVSNKSAFLCGVMKTYR 573
           +L E P   A++VL QFL S  +   NK  +   ++  Y+
Sbjct: 723 SLNELPEKAAVAVLNQFLISGADK-HNKGDYFASLIAKYQ 761


>09_02_0224 -
           5984128-5984923,5985667-5986718,5986800-5987776,
           5988427-5989228,5990966-5991016,5992391-5993464,
           5994458-5994706
          Length = 1666

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +1

Query: 493 LGQFLDSNLEHVSNKSAFLCG-VMKTYRIASPANSTKNLLKSHHSTRVNALNDSPITSLK 669
           L  +L SNL HV + +AF    V K+  I  P++++ + L S  S   + + D    SL+
Sbjct: 659 LNSYLPSNLRHVQSTNAFSSSTVTKSSSIKLPSSNSNHELSSLSSPTEHVIADGS-KSLQ 717

Query: 670 *IP 678
            +P
Sbjct: 718 LVP 720


>12_01_0231 + 1744323-1745276,1745516-1746193
          Length = 543

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +1

Query: 496 GQFLDSNLEHVSNKSAFLCGVMKTYRIASPANSTKNLLKSHHSTRVNAL 642
           G ++  N + V NK+    G  + +R     + T  L++ HH  R  A+
Sbjct: 435 GTWVRQNSKEVKNKAGVKVGETQNFRFKKDGSYTDWLMEEHHCCRQQAV 483


>11_06_0553 -
           24920428-24921057,24921149-24921276,24921372-24921409,
           24921522-24921734,24921906-24921998,24922089-24922276,
           24922396-24922502,24922614-24922775,24922870-24922953,
           24923060-24923168,24923340-24923468,24923504-24923556,
           24923654-24923759,24924082-24924189
          Length = 715

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +1

Query: 241 KITKIVK*RMAEGNGEISYDEVAGKDSDVGRTEDYHKLIEYGLDPKVAAKL-DDIYKTGK 417
           K+T+I+   + +G+  +    ++  D D+G T       +     + + +L +DI K  +
Sbjct: 454 KLTQILSDSLGDGSKVLMVVHISPSDDDIGETVCSLSFAKRARSIESSKELSEDIKKLKQ 513

Query: 418 LAHAELDERALDALKE 465
              AELD+   DA +E
Sbjct: 514 KRIAELDKEICDAEQE 529


>01_06_0514 + 29955129-29955796,29955903-29956023
          Length = 262

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 277 GNGEISYDEVAGKDSDVGRTEDYHKLIEYGLDPKVAAKLDD 399
           G+G ++ DE+A    D   +E+Y  +IE+G +P+    L D
Sbjct: 132 GSGSVTLDEIA----DFALSEEYTCVIEHGPNPRTTHILGD 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,484,876
Number of Sequences: 37544
Number of extensions: 429154
Number of successful extensions: 885
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)