Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23i05
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL137227-1|CAB70238.2|  611|Caenorhabditis elegans Hypothetical ...    50   2e-06
Z93384-1|CAB07633.3|  342|Caenorhabditis elegans Hypothetical pr...    31   0.88 
Z97628-3|CAB10727.1|  819|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z79755-13|CAB02114.1|  819|Caenorhabditis elegans Hypothetical p...    29   4.7  
Z74032-6|CAA98468.2|  234|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z83104-5|CAC35810.1|  570|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AB012700-1|BAA89795.1|  570|Caenorhabditis elegans FLR-4 protein.      28   8.2  

>AL137227-1|CAB70238.2|  611|Caenorhabditis elegans Hypothetical
           protein F58D5.1 protein.
          Length = 611

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 25/85 (29%), Positives = 48/85 (56%)
 Frame = +1

Query: 319 SDVGRTEDYHKLIEYGLDPKVAAKLDDIYKTGKLAHAELDERALDALKEFPSDGALSVLG 498
           S    TE+Y KLI   + P +A  + +IY++G L   +LD+RA+D +     D A  +  
Sbjct: 52  SKYAETENYKKLIGLKMKPALADVVCEIYESGLLGPEDLDDRAVDIINSVNLDQAKFIFT 111

Query: 499 QFLDSNLEHVSNKSAFLCGVMKTYR 573
           +  +S L  V+ KS ++  ++++++
Sbjct: 112 EIKNSELFGVATKSLYVTSLIRSFK 136


>Z93384-1|CAB07633.3|  342|Caenorhabditis elegans Hypothetical
           protein H08M01.1 protein.
          Length = 342

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 438 RACSRCLKRISIRRCFKCSWTIFR 509
           + C +CLK I   +CF+  WT+FR
Sbjct: 286 KVCPKCLKMIGCAKCFRW-WTVFR 308


>Z97628-3|CAB10727.1|  819|Caenorhabditis elegans Hypothetical
           protein F43G9.12 protein.
          Length = 819

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
 Frame = +1

Query: 289 ISYDEVAGKDSDVGRTEDYHKLIEYGLDPKVAAKLDDIYKTGKLAHAELD----ERALDA 456
           +S+D   G DS     +D  K+ E     K+  + + +YK  K+    LD    +  L  
Sbjct: 45  MSFDADEGADSTFKLKKDKKKVEELKRQHKLEEEAEKLYKEEKIRKEALDKIVKKEKLSK 104

Query: 457 LKEFPSDGALSVLGQFLDSNLEHVSNKSAF 546
             +   +     L ++ D + +H+SN  ++
Sbjct: 105 EDKKTKNERHKYLDKYRDKSAKHISNSESY 134


>Z79755-13|CAB02114.1|  819|Caenorhabditis elegans Hypothetical
           protein F43G9.12 protein.
          Length = 819

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
 Frame = +1

Query: 289 ISYDEVAGKDSDVGRTEDYHKLIEYGLDPKVAAKLDDIYKTGKLAHAELD----ERALDA 456
           +S+D   G DS     +D  K+ E     K+  + + +YK  K+    LD    +  L  
Sbjct: 45  MSFDADEGADSTFKLKKDKKKVEELKRQHKLEEEAEKLYKEEKIRKEALDKIVKKEKLSK 104

Query: 457 LKEFPSDGALSVLGQFLDSNLEHVSNKSAF 546
             +   +     L ++ D + +H+SN  ++
Sbjct: 105 EDKKTKNERHKYLDKYRDKSAKHISNSESY 134


>Z74032-6|CAA98468.2|  234|Caenorhabditis elegans Hypothetical
           protein F35B12.8 protein.
          Length = 234

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +1

Query: 490 VLGQFLDSNLEHVSNKSAFLCGVMKTYRIASPANSTKNLLKSHHSTRVNAL 642
           ++ +  DS LEHV +  +  C  + +YR    A+ +K L    HS   N L
Sbjct: 175 MISEVKDSYLEHVRHARSSSCPQINSYRFI--ASRSKRLRSRKHSESANKL 223


>Z83104-5|CAC35810.1|  570|Caenorhabditis elegans Hypothetical
           protein F09B12.6 protein.
          Length = 570

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = -3

Query: 432 LCVR*LSSLINVVELGGYLRIQAILNKFV--VIFCPANIRIL-PSYLIIGYFSIALRHSL 262
           +C   L   + +  LG +L I   + +FV  +I    N  ++ P YLII    I L  +L
Sbjct: 425 ICYLLLFLSLGITALGSFLLISYFVVRFVRYLIAINCNCDLMQPQYLIISGILIVLMFAL 484

Query: 261 FYNFC 247
            ++ C
Sbjct: 485 LFSCC 489


>AB012700-1|BAA89795.1|  570|Caenorhabditis elegans FLR-4 protein.
          Length = 570

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = -3

Query: 432 LCVR*LSSLINVVELGGYLRIQAILNKFV--VIFCPANIRIL-PSYLIIGYFSIALRHSL 262
           +C   L   + +  LG +L I   + +FV  +I    N  ++ P YLII    I L  +L
Sbjct: 425 ICYLLLFLSLGITALGSFLLISYFVVRFVRYLIAINCNCDLMQPQYLIISGILIVLMFAL 484

Query: 261 FYNFC 247
            ++ C
Sbjct: 485 LFSCC 489


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,701,870
Number of Sequences: 27780
Number of extensions: 386410
Number of successful extensions: 955
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)