Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23h23
(690 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar... 30 0.36
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 27 3.4
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ... 27 3.4
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa... 26 4.5
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.5
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po... 26 4.5
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 26 5.9
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.9
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 26 5.9
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 26 5.9
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 25 7.8
>SPCC1672.02c |sap1||switch-activating protein
Sap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 254
Score = 29.9 bits (64), Expect = 0.36
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Frame = +3
Query: 195 NEKLLNKLESSSYNKSNMDQLIAIVNFLEK---KNINYILNVMPVMQDERKMSKRKKKGI 365
N+++ +L+ + + N+D L+A VNFL K N ++ V M + +KR ++ +
Sbjct: 143 NDEINERLKKLTEEQQNVDMLVAKVNFLSKHLHDNEEKLMQVNAKMDEVLAENKRLQQLL 202
Query: 366 NNN 374
++N
Sbjct: 203 DHN 205
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 321 MQDERKMSKRKKKGINNNKYILFNSW 398
+QDE + S R KG+N N+ F S+
Sbjct: 143 VQDEIRFSSRNSKGVNYNEDAYFESF 168
>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 571
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/68 (17%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Frame = +3
Query: 198 EKLLNKLESSSYN-KSNMDQLIAIVNFLEK--KNINYILNVMPVMQDERKMSKRKKKGIN 368
E + +S S++ + +++A++N ++ ++IN++ + + ++ K + K++ +
Sbjct: 421 EDEVTNFDSRSFSLRLRRSEIVALINTFDRLSRSINFVDDFKQIYSEQHKPASFKRRVLR 480
Query: 369 NNKYILFN 392
K +LF+
Sbjct: 481 RIKQLLFS 488
>SPAC23D3.08 |usp108||U1 snRNP-associated protein
Usp108|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 195 NEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYI 302
NEK ++ + +S N+S + QL A + L +K ++YI
Sbjct: 307 NEKFISVVGTSEANQSALMQLYAALISLGRKIVSYI 342
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 26.2 bits (55), Expect = 4.5
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = +1
Query: 457 KTRPNWQILCSFLITLKRWVKKWPTDRHRRLQ--ATTQQFQRAKKRQTAVLTNANLAEL 627
KT NWQ + LK V + D H+R + + +K Q A +LAE+
Sbjct: 1560 KTNKNWQDRTASATGLKARVDNFTIDLHQRSEKHEVKNKANLGRKHQEATSMKVHLAEI 1618
>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 508
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/76 (21%), Positives = 36/76 (47%)
Frame = +3
Query: 120 KGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINY 299
+ L+K+N+ PE+ +S + +LL L S N + + + L + ++
Sbjct: 394 ESLRKTNLSVKPEEITSRPHPLSQRVAELLYSLSMLSVNVVEAEPVARSASRLAQDYVSM 453
Query: 300 ILNVMPVMQDERKMSK 347
+ N+ + D+R+ S+
Sbjct: 454 LQNLCKTVNDKRRQSR 469
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 87 NISSRIQAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQ 254
++SS+ + F ++ + EQ S + K ++LN L YN N DQ
Sbjct: 579 SLSSKHEVDLFTAENEAAREKLVEQLCSLQAQRKQKINEILNLLSMGMYNTINTDQ 634
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 25.8 bits (54), Expect = 5.9
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = -2
Query: 377 FIVVNPLLLAFGHFAFVLHDRHYVEDIVNVLFFQEIYNSN*LVHVGFVVRARFQFIQQLF 198
FI+ LL F F H V + V FFQ ++ S L + G + F +Q+ +
Sbjct: 172 FIIYFVTLLIFTIFQVGGGCAHNVWTLAIVRFFQGVFGSTPLANAGGTISDLFTPVQRTY 231
Query: 197 I 195
+
Sbjct: 232 V 232
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = -2
Query: 326 LHDRHYVEDIVNVLFF 279
L+DR YVE I+++LFF
Sbjct: 253 LYDRVYVEKILDILFF 268
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 25.8 bits (54), Expect = 5.9
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = -1
Query: 144 PCLIFVNL*NDPLVFLMIYFFNAQQPGNSFVMKTHLTLRTFVGNYCEI 1
P LI ++L L +I+FF+ P N+F M+T LT T + N E+
Sbjct: 993 PALIQLSLDGFRLAMNVIFFFSMDLPRNAF-MQT-LTKFTHLNNTSEL 1038
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 25.4 bits (53), Expect = 7.8
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = +3
Query: 270 NFLEKKNINYILNVMPVMQDERKMSKRKKKGINNNKYILFNS---WYTKIKQPEWPSSPA 440
+ L +K N ++ V + + K + +K + N IL NS W IK+P S P
Sbjct: 902 SILYEKQKNLQASITEVSK-QLKSNSKKVTVLRNKLNILNNSLSKWKCLIKKPSDFSEPV 960
Query: 441 MWDLVKNTPELADFV 485
D N +L +
Sbjct: 961 SMDFTSNDEQLVQLL 975
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,963,309
Number of Sequences: 5004
Number of extensions: 64270
Number of successful extensions: 209
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -