Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23h23
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0284 + 3787308-3787646,3787660-3787890                           29   3.5  
11_06_0557 - 24955837-24956214,24957225-24957395,24957576-249576...    29   4.6  
04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471           28   6.1  
03_05_0092 - 20714102-20717902                                         28   6.1  
01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678     28   6.1  
11_02_0036 + 7599646-7599950,7600106-7600145,7600403-7600437,760...    28   8.0  
07_03_0543 + 19272389-19272534,19273337-19273496,19273584-192737...    28   8.0  
07_03_0508 - 18892193-18893119,18893183-18894528,18894594-18895206     28   8.0  

>04_01_0284 + 3787308-3787646,3787660-3787890
          Length = 189

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = +3

Query: 495 DHTEKMGKKMADRXXXXXXXDNAAIPASKKKTDCGAYQRKFGRIKRELRKC 647
           DH+ K+G+   ++       D   +   ++K   G ++ +  R+K EL +C
Sbjct: 128 DHSMKVGEIQTNKNMMKGENDKIQLEVLREKQKHGLFEARVERLKMELDRC 178


>11_06_0557 -
           24955837-24956214,24957225-24957395,24957576-24957635,
           24958419-24958623,24958710-24958953,24959103-24959394,
           24959734-24960828,24960915-24961409,24961665-24961823,
           24961893-24962387
          Length = 1197

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 600 AYQRKFGRIKRELRKCAISFIRSFTA 677
           ++++KFG    ELRKC+   I+S +A
Sbjct: 564 SFKKKFGNTAVELRKCSTCLIKSLSA 589


>04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471
          Length = 331

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 399 YTKIKQPEWPSSPAMWDLVKNTPELADFVFI-FDHTEK 509
           + +  +PEWPSS A+     N PEL   V +  D T K
Sbjct: 169 HDQTNKPEWPSSVAVQHDQTNKPELPSSVAVQHDQTNK 206


>03_05_0092 - 20714102-20717902
          Length = 1266

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = -2

Query: 458 FHQIPHGRATRPLGLLDLSVPTVKQNVFIVVNPLLLAFGHFAFVLHDRHYVEDIVNVLFF 279
           F  +       PL +  L++ T   N+  ++N L L   H +    D+H+++ I  ++FF
Sbjct: 571 FFMVTESSGDVPLEVRHLTIMT--NNLSKLINDLSLKISHSSG--SDQHFLQRIRTIIFF 626

Query: 278 QEIYNSN 258
            +  NS+
Sbjct: 627 ADFSNSD 633


>01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678
          Length = 261

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 363 INNNKYILFNSWYTKIKQPEWPSSPAMWDLVKNTPELADFV 485
           I+ N Y+   +W T+  QP    S   W L K +   A +V
Sbjct: 137 ISENSYLCVATWDTRAPQPSQIESAVRWALRKRSQNKAVYV 177


>11_02_0036 +
           7599646-7599950,7600106-7600145,7600403-7600437,
           7600789-7601189,7601281-7601361,7601451-7601536
          Length = 315

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 515 THLFSVIKNEHKICQFGRVFHQIP 444
           TH F  +K E+ IC F R    IP
Sbjct: 198 THSFDAMKKEYYICGFARSIESIP 221


>07_03_0543 +
           19272389-19272534,19273337-19273496,19273584-19273741,
           19273852-19273945,19274082-19274198,19275119-19275229,
           19275309-19275396,19275615-19275718,19275796-19275867,
           19275950-19276039,19276151-19276308,19276746-19276752,
           19277140-19277194,19277273-19277421,19277543-19277664,
           19277916-19278105
          Length = 606

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 593 LRCLPTQIWQN*KRAAKMRDKLYSE 667
           L C P+ +W+N +R  + RDK+ +E
Sbjct: 428 LVCYPSMLWRNHRRNLQRRDKIRAE 452


>07_03_0508 - 18892193-18893119,18893183-18894528,18894594-18895206
          Length = 961

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 38  RCVFITNELPGCWALKKYIIKNTSGSFQRFTKIKHGKHAGATI 166
           +  FIT     C+    + +KN   +FQR T+I  G   G  +
Sbjct: 803 KTAFITRIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGRNV 845


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,607,532
Number of Sequences: 37544
Number of extensions: 394606
Number of successful extensions: 1002
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)