Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23h23
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50110-3|CAA90445.2|  459|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe...    30   1.4  
AC006701-1|AAM97962.1|  327|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U80031-1|AAB37611.1|  392|Caenorhabditis elegans Downstream of d...    29   3.1  
U41547-5|AAX88831.1|  272|Caenorhabditis elegans C.elegans homeo...    29   3.1  
U88173-9|AAK21384.3|  320|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z81508-8|CAI58634.1|  294|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z81127-9|CAB03394.3|  735|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z81056-11|CAB02911.3|  735|Caenorhabditis elegans Hypothetical p...    27   9.6  
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ...    27   9.6  

>Z50110-3|CAA90445.2|  459|Caenorhabditis elegans Hypothetical
           protein F18H3.4 protein.
          Length = 459

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 22/80 (27%), Positives = 40/80 (50%)
 Frame = +3

Query: 132 KSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILNV 311
           K N+    EQ   TE  A+ +N+KLL  L   + ++  MDQ +   N ++K  + + L  
Sbjct: 121 KRNLSARDEQALVTEIDALKRNKKLLESLAEITSHRKGMDQELE-KNRIQKHKVYFELT- 178

Query: 312 MPVMQDERKMSKRKKKGINN 371
               Q+  K  K++++ I +
Sbjct: 179 --SCQNRFKQMKQERRHIED 196


>AC025723-10|AAK29940.1|  691|Caenorhabditis elegans Mammalian fe65
           homolog protein1, isoform a protein.
          Length = 691

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +3

Query: 171 TETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNI--NYILNVMPVMQDERKMS 344
           T +   CK +K    L S    + N+D  I  V+F +KK I   +  +V+    DE    
Sbjct: 33  TLSLGTCKQQKKKKNLYSDLACRKNVDIFIIYVSFEKKKEIFLEFFHHVLQEEHDEYSAF 92

Query: 345 KRKKKGINNNKYILFN 392
           K   +   + +Y++ N
Sbjct: 93  KEAYEEEESREYVIEN 108


>AC006701-1|AAM97962.1|  327|Caenorhabditis elegans Hypothetical
           protein Y104H12D.2 protein.
          Length = 327

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +3

Query: 180 AAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINY 299
           AA  KNE LL+ L+  SYN++   Q++ I     K N NY
Sbjct: 34  AARTKNETLLSLLDKFSYNET--VQMVVIKQIGRKNNCNY 71


>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical protein
            B0024.8 protein.
          Length = 1185

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
 Frame = +3

Query: 303  LNVMPVMQDERKMSKRKKKGINNNKYILFN--SWYTKIKQPEWPSSPAMWDLVKNTPELA 476
            ++++P M    K S  K++     +Y   +  ++ +K KQ E  + P +WD VKN+    
Sbjct: 1083 VSLLPAMTSATKKSNVKQRPFILTQYCELSKLAYKSKPKQVEVMALPLLWDSVKNSAPDV 1142

Query: 477  DFVFIFDHTEKMGKKMADRXXXXXXXDNAAIPASKKKTD 593
            D      +  K   K+           +   P  KK+ D
Sbjct: 1143 DNKKATQYLAKTLAKLIGEKQLLDLATSELDPNRKKQLD 1181


>U80031-1|AAB37611.1|  392|Caenorhabditis elegans Downstream of
           daf-16 (regulatedby daf-16) protein 20 protein.
          Length = 392

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 334 AKCPNARRRGLTTINTFCLTVGTLRSSSPSGLVAR 438
           +K PN   RG+  +NT  L + T+  ++PS ++++
Sbjct: 130 SKSPNIILRGMGNLNTTILFLNTIMGTNPSSIISQ 164


>U41547-5|AAX88831.1|  272|Caenorhabditis elegans C.elegans homeobox
           protein 60 protein.
          Length = 272

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 22/112 (19%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
 Frame = +3

Query: 126 LQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNIN-YI 302
           + K   ++   +++ T +  V +N +    ++   +  SN+ Q I+      K NI    
Sbjct: 68  IMKQIQLDKDMEKALTNSEEVLRNHRDFRPIDEKDF--SNIRQSISKRFEHSKNNIRGEA 125

Query: 303 LNVMPVMQDERKMSKRKKKGINNNKYILFNSWYTKIKQPEWPSSPAMWDLVK 458
              + V++ E +   RK++  + N   +  +W+   +Q  +PS     +L K
Sbjct: 126 ATKILVLRREIEQQGRKRRNFDKNTTDILQNWFHDHRQNPYPSDQEKAELAK 177


>U88173-9|AAK21384.3|  320|Caenorhabditis elegans Hypothetical
           protein F46F11.7 protein.
          Length = 320

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -1

Query: 612 CVGKHRSLSFFCSLELLRCRLKTTMSIGRPFFYPSFQCDQ 493
           C G+++S S FCS E + CR     S G+ +   S +C++
Sbjct: 42  CFGRNKSPSTFCSFE-VECREGFVCSEGKCYPITSVKCNR 80


>Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical
           protein T06E6.6 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -2

Query: 434 ATRPLGLLD--LSVPTVKQNVFIVVNPLLLAFGHFAFVLHDRHY 309
           A  PLG+L     VPT  Q  F+  N  ++   HF  V+ +R+Y
Sbjct: 72  AGTPLGILTEWFEVPTSFQTYFVFTNFFIVMVNHF-LVVENRYY 114


>Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical
           protein F48F5.1 protein.
          Length = 1291

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +3

Query: 210 NKLESSSYNKSNMDQLIAIVNFLEKKNINYILNVMPVMQDERKMSKRKKKGINNNK 377
           N LE+    KSNM +++   N  EK  +   L       + RK++++KK   N  +
Sbjct: 818 NALEAKIKEKSNMRKVVDEQNQREKDELQAKLRADQEKSEARKIAEKKKDEQNQKE 873


>Z81508-8|CAI58634.1|  294|Caenorhabditis elegans Hypothetical
           protein F20E11.15 protein.
          Length = 294

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
 Frame = -2

Query: 515 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVP---TVKQNVFIVV---NPLL 354
           T LF++I +   IC+ G+  ++ P       L L+D+ +     V  ++F+ V   N LL
Sbjct: 186 TLLFAIILSLKLICKAGKTTNKDPTMNRANRLALIDVIIIFFFDVLLSIFLTVFDQNNLL 245

Query: 353 LAFGHFAFVLHD 318
              G FA VL +
Sbjct: 246 TNSGPFASVLRE 257


>Z81127-9|CAB03394.3|  735|Caenorhabditis elegans Hypothetical
           protein F09F3.9 protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 416 LLDLSVPTVKQNVFIVVNPLLLAFGH-FAFVLHDRHYVE 303
           L + S+P ++QN+  +V PL ++ G  +  V   RH+++
Sbjct: 57  LRNFSLPDIQQNIQTIVRPLAISIGSVYTSVFLLRHFLK 95


>Z81056-11|CAB02911.3|  735|Caenorhabditis elegans Hypothetical
           protein F09F3.9 protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 416 LLDLSVPTVKQNVFIVVNPLLLAFGH-FAFVLHDRHYVE 303
           L + S+P ++QN+  +V PL ++ G  +  V   RH+++
Sbjct: 57  LRNFSLPDIQQNIQTIVRPLAISIGSVYTSVFLLRHFLK 95


>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
            protein Y11D7A.14 protein.
          Length = 1464

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 33/134 (24%), Positives = 54/134 (40%)
 Frame = +3

Query: 129  QKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLIAIVNFLEKKNINYILN 308
            +KS  V + ++    E       EKLL K          M+Q   I N LE+K       
Sbjct: 868  EKSEKVKVQKELEEVEKQG---REKLLEKEREFRKTMEEMEQNEEIFNVLERKYNEQHKK 924

Query: 309  VMPVMQDERKMSKRKKKGINNNKYILFNSWYTKIKQPEWPSSPAMWDLVKNTPELADFVF 488
            VM  M D  +  +RK + +N  K  L N    K+++ +        +L K   E +  + 
Sbjct: 925  VMK-MNDVLREYERKIEQLNMEKTDLENE-NQKLRETQNRQDSHYSNLEKEVMEKSSLI- 981

Query: 489  IFDHTEKMGKKMAD 530
              D  +   +K++D
Sbjct: 982  --DELQNQIQKLSD 993


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,659,536
Number of Sequences: 27780
Number of extensions: 373324
Number of successful extensions: 1083
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)