Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23h22
(705 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 202 5e-53
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 177 1e-45
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 30 0.28
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom... 29 0.86
SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ... 28 1.1
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch... 28 1.5
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 27 2.0
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 27 2.0
SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr ... 27 2.6
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 27 3.5
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha... 27 3.5
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom... 27 3.5
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 3.5
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 27 3.5
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 27 3.5
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 27 3.5
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot... 26 4.6
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 26 4.6
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo... 26 4.6
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 4.6
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 26 6.0
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 26 6.0
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo... 25 8.0
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 202 bits (492), Expect = 5e-53
Identities = 108/196 (55%), Positives = 134/196 (68%), Gaps = 4/196 (2%)
Frame = +3
Query: 105 KHRYKNVG-LSADELRRRREEEGVQLRKQKREQQLFKRRN---VNLPGTNAAGAASQEDI 272
+ YK G ADELRRRRE + +++RKQKRE+ L KRRN V P Q+
Sbjct: 13 RQNYKGKGTFQADELRRRRETQQIEIRKQKREENLNKRRNLVDVQEPAEETI-PLEQDKE 71
Query: 273 NISPSDCITPDMVLAVYLDNPEEQVIATQKFRKLLSKEPNPPIDAVIQSGIVPKFIEFLT 452
N + PD++ A+Y D+ E Q+ AT KFRK LSKE NPPI VI +G+VP+F+EFL+
Sbjct: 72 NDLELELQLPDLLKALYSDDIEAQIQATAKFRKALSKETNPPIQKVIDAGVVPRFVEFLS 131
Query: 453 NHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSGSTENVCEQAVWALGNI 632
H+N L+FEA+WALTN+ASGSS QT +VV+ AV V V LLS S ++V EQAVWALGNI
Sbjct: 132 -HENNLLKFEASWALTNVASGSSNQTHVVVEANAVPVFVSLLSSSEQDVREQAVWALGNI 190
Query: 633 AGDSPYCRDIVLAAGV 680
AGDSP CRD VL GV
Sbjct: 191 AGDSPMCRDHVLQCGV 206
Score = 61.7 bits (143), Expect = 1e-10
Identities = 33/106 (31%), Positives = 57/106 (53%)
Frame = +3
Query: 375 LSKEPNPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGA 554
LS N I A+I +GI + +E L H + +Q A ++ NI +G QT+++++ GA
Sbjct: 275 LSDGANEKIQAIIDAGIPRRLVELLM-HPSAQVQTPALRSVGNIVTGDDVQTQVIINCGA 333
Query: 555 VNVLVGLLSGSTENVCEQAVWALGNIAGDSPYCRDIVLAAGVSPTL 692
++ L+ LLS + V ++A W + NI + V+ A + P L
Sbjct: 334 LSALLSLLSSPRDGVRKEACWTISNITAGNSSQIQYVIEANIIPPL 379
Score = 37.5 bits (83), Expect = 0.002
Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Frame = +3
Query: 381 KEPNPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVN 560
K P P +++ Q ++P + + L +A WA++ ++ G++ + + ++D G
Sbjct: 237 KNPQPDWNSISQ--VIPVLSKLIYTLDEDVL-VDALWAISYLSDGANEKIQAIIDAGIPR 293
Query: 561 VLVGLLSGSTENVCEQAVWALGNI-AGDSPYCRDIVLAAGVSPTLA 695
LV LL + V A+ ++GNI GD + I+ +S L+
Sbjct: 294 RLVELLMHPSAQVQTPALRSVGNIVTGDDVQTQVIINCGALSALLS 339
Score = 36.3 bits (80), Expect = 0.004
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = +3
Query: 408 VIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSGS 587
V+++ VP F+ L++ + + +A WAL NIA S V+ G + L+ ++ +
Sbjct: 159 VVEANAVPVFVSLLSSSEQDVRE-QAVWALGNIAGDSPMCRDHVLQCGVLEPLLNIIESN 217
Query: 588 TE-NVCEQAVWALGNIA-GDSP 647
++ + W L N+ G +P
Sbjct: 218 RRLSMLRNSTWTLSNMCRGKNP 239
Score = 28.7 bits (61), Expect = 0.86
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +3
Query: 537 VVDYGAVNVLVGLLSGSTENVCEQAVWALGNIAGDSPYCRDIVLAAGVSP 686
V+D G V V LS + +A WAL N+A S +V+ A P
Sbjct: 117 VIDAGVVPRFVEFLSHENNLLKFEASWALTNVASGSSNQTHVVVEANAVP 166
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 177 bits (432), Expect = 1e-45
Identities = 101/197 (51%), Positives = 129/197 (65%), Gaps = 5/197 (2%)
Frame = +3
Query: 105 KHRYKNVGL-SADELRRRREEEGVQLRKQKREQQLFKRRNVNLPGTNAAGA---ASQEDI 272
+ R+K+ G+ ADELRR+REE+ +++RKQKRE+ L KRRN+N N A Q +
Sbjct: 10 RSRFKSKGVFKADELRRQREEQQIEIRKQKREESLNKRRNLNAVLQNDIDVEEEADQSQV 69
Query: 273 NISPS-DCITPDMVLAVYLDNPEEQVIATQKFRKLLSKEPNPPIDAVIQSGIVPKFIEFL 449
+ P + V D+ E Q+ A KFRK LSKE +PPID VI G+V +F++FL
Sbjct: 70 QMEQQMKDEFPKLTADVMSDDIELQLGAVTKFRKYLSKETHPPIDQVIACGVVDRFVQFL 129
Query: 450 TNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSGSTENVCEQAVWALGN 629
+ + LQFEAAWALTNIASG++ QTRIVVD GAV + LLS ++V EQ VWALGN
Sbjct: 130 ESEHH-LLQFEAAWALTNIASGTTDQTRIVVDSGAVPRFIQLLSSPEKDVREQVVWALGN 188
Query: 630 IAGDSPYCRDIVLAAGV 680
IAGDS CRD VL GV
Sbjct: 189 IAGDSSACRDYVLGNGV 205
Score = 67.7 bits (158), Expect = 2e-12
Identities = 39/128 (30%), Positives = 71/128 (55%), Gaps = 2/128 (1%)
Frame = +3
Query: 309 VLAVYLDNPEEQVIATQKFR-KLLSKEPNPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEA 485
+LA L + + ++I + LS PN I A++ G P+ +E L++ + +Q A
Sbjct: 252 ILAKLLYSEDVEIIVDACWAISYLSDGPNEKIGAILDVGCAPRLVELLSS-PSVNIQTPA 310
Query: 486 AWALTNIASGSSGQTRIVVDYGAVNVLVGLLSGSTENVCEQAVWALGNI-AGDSPYCRDI 662
++ NI +G+ QT+I++D GA+N LLS EN+ ++A W + NI AG++ + I
Sbjct: 311 LRSVGNIVTGTDAQTQIIIDCGALNAFPSLLSHQKENIRKEACWTISNITAGNTQQIQAI 370
Query: 663 VLAAGVSP 686
+ + + P
Sbjct: 371 IESNLIPP 378
Score = 48.0 bits (109), Expect = 1e-06
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = +3
Query: 408 VIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSGS 587
V+ SG VP+FI+ L++ + + + WAL NIA SS V+ G + L+ +L S
Sbjct: 158 VVDSGAVPRFIQLLSSPEKDVRE-QVVWALGNIAGDSSACRDYVLGNGVLQPLLNILQSS 216
Query: 588 TENV--CEQAVWALGNIA-GDSP 647
+V A W L N+ G +P
Sbjct: 217 ASDVSMLRNATWTLSNLCRGKNP 239
Score = 44.8 bits (101), Expect = 1e-05
Identities = 21/74 (28%), Positives = 41/74 (55%)
Frame = +3
Query: 408 VIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSGS 587
+I G + F L+ H+ ++ EA W ++NI +G++ Q + +++ + LV LLS +
Sbjct: 328 IIDCGALNAFPSLLS-HQKENIRKEACWTISNITAGNTQQIQAIIESNLIPPLVHLLSYA 386
Query: 588 TENVCEQAVWALGN 629
++A WA+ N
Sbjct: 387 DYKTKKEACWAISN 400
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 30.3 bits (65), Expect = 0.28
Identities = 21/83 (25%), Positives = 40/83 (48%)
Frame = +3
Query: 399 IDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLL 578
+DA S I+P+ + ++ +H NP++ A AL + AS + I + +N L+ LL
Sbjct: 359 LDAQNSSQILPELLYYINSHPNPSVASTAVKALGDFASAN-----ISMAPSCLNTLLLLL 413
Query: 579 SGSTENVCEQAVWALGNIAGDSP 647
+ +A +L + + P
Sbjct: 414 KSHNSLIVTEAASSLRLLIHNDP 436
>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 28.7 bits (61), Expect = 0.86
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +3
Query: 447 LTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSGSTENVCEQAVWALG 626
L K+ +Q A AL N+ + ++V G + VLV LL S +V ++
Sbjct: 175 LAKSKDIRVQRNATGALLNMTHSYENRQQLV-SAGTIPVLVSLLPSSDTDVQYYCTTSIS 233
Query: 627 NIAGDS 644
NIA D+
Sbjct: 234 NIAVDA 239
Score = 25.8 bits (54), Expect = 6.0
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Frame = +3
Query: 327 DNPEEQVIATQKFRKLL-SKEPNPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTN 503
+N E Q A R L S E N A+I++ + K + L ++Q E L
Sbjct: 346 ENEEIQCHAVSTLRNLAASSERNKR--AIIEANAIQK-LRCLILDAPVSVQSEMTACLAV 402
Query: 504 IASGSSGQTRIVVDYGAVNVLVGLLSGSTENVCEQAVWALGNIAGD 641
+A ++ ++ ++G NVL+ L + V + ALGN++ +
Sbjct: 403 LALSDEFKSYLL-NFGICNVLIPLTDSMSIEVQGNSAAALGNLSSN 447
>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 332
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +3
Query: 612 VWALGNIAGDSPYCRDIVLAAGV 680
V+A+G+I GD P D++ AAGV
Sbjct: 59 VYAIGDIHGDFPNALDVLSAAGV 81
>SPAC1006.02 |||WD repeat protein, human GNB1L
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +3
Query: 414 QSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDY 548
+SG V ++I L N K TL F+A W + A S Q + V+Y
Sbjct: 213 ESGHVVQYICSLENVKTVTLDFKAVWKMV-YAYKSHSQPVLSVEY 256
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 198 QQLFKRRNVNLPGTNAAGAASQEDINISPSDC-ITPDMVLAVYLDNPEEQVIA 353
++ F+R+NV+L T+ G ++ + SDC I + ++L+ P EQVIA
Sbjct: 527 EEAFERKNVHLKSTDIRGFHAKVPQQSNFSDCGIYALHFVELFLETP-EQVIA 578
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 105 KHRYKNVGLSADELRRRREEEGVQLRKQKREQQLFKRR 218
K + K A + R+ E++ + +R+Q+RE+ L KRR
Sbjct: 176 KEKEKKKSSDAWKERKDNEKKAMLMRQQRREENLKKRR 213
>SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 283
Score = 27.1 bits (57), Expect = 2.6
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Frame = +3
Query: 171 VQLRKQKREQQLFKRRNVNLPGTNAAGAASQEDINISPS---DCITPD-MVLAVYLDNPE 338
+++++Q E R+ P +A A+Q+ + + + TPD + +AV +
Sbjct: 165 IKVKEQSWENLARGRKVYEPPRYMSASLAAQQMLEVEEDRQENICTPDSLCVAVGRMGSD 224
Query: 339 EQVIATQKFRKLLSKEPNPPIDAVIQSG 422
+QVI ++L + PP+ +V+ G
Sbjct: 225 DQVIFAGTLQELAEHDIGPPLHSVVLVG 252
>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/59 (23%), Positives = 25/59 (42%)
Frame = -2
Query: 605 LAHVLRRATQ*SYQHIYCAIIHYDTSLS*RTRGDVCQRPCRLKL*GWILMVCQEFNKFW 429
LA + + + Y IY ++ ++ G + Q + WIL++ FN FW
Sbjct: 156 LADLFEKKDRGKYMVIYFTVLSIGPGIAPIISGFISQSSIGWQWEFWILLILSGFNLFW 214
>SPBC1711.04 |||methylenetetrahydrofolate reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 320
Score = 26.6 bits (56), Expect = 3.5
Identities = 18/55 (32%), Positives = 22/55 (40%)
Frame = +3
Query: 384 EPNPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDY 548
EPN V S + F+E L H N FE A L S S R+ D+
Sbjct: 8 EPNHSCKVVYASRVAETFVEQLKQHVN---LFEFAPKLVGFLSNSDPAARMYADW 59
>SPBPB2B2.16c |||MFS family membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/59 (23%), Positives = 25/59 (42%)
Frame = -2
Query: 605 LAHVLRRATQ*SYQHIYCAIIHYDTSLS*RTRGDVCQRPCRLKL*GWILMVCQEFNKFW 429
LA + + + Y IY ++ ++ G + Q + WIL++ FN FW
Sbjct: 156 LADLFEKKDRGKYMVIYFTVLSIGPGIAPIISGFISQSSIGWQWEFWILLILSGFNLFW 214
>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/59 (23%), Positives = 25/59 (42%)
Frame = -2
Query: 605 LAHVLRRATQ*SYQHIYCAIIHYDTSLS*RTRGDVCQRPCRLKL*GWILMVCQEFNKFW 429
LA + + + Y IY ++ ++ G + Q + WIL++ FN FW
Sbjct: 156 LADLFEKKDRGKYMVIYFTVLSIGPGIAPIISGFISQSSIGWQWEFWILLILSGFNLFW 214
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 576 LSGSTENVCEQAVWALGNIAGDS 644
+SG+TEN+ E+A+ L IA S
Sbjct: 537 ISGNTENIYERAIVTLSRIASQS 559
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 90 MSGGHKHRYKNVGLSADELRRRREEEGVQLRKQKREQQ 203
++G HK + + + +L +++ EE + LRK REQ+
Sbjct: 38 LTGFHKRKVERRKHAQVQLEQQKREERLALRKSLREQR 75
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 153 RREEEGVQLRKQKREQQLFKRRNV 224
RR+ VQL +QKRE++L R+++
Sbjct: 48 RRKHAQVQLEQQKREERLALRKSL 71
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/57 (21%), Positives = 28/57 (49%)
Frame = +3
Query: 240 NAAGAASQEDINISPSDCITPDMVLAVYLDNPEEQVIATQKFRKLLSKEPNPPIDAV 410
N +G ++ +I + + V +DNP+ + +T K+R + P+ P+ ++
Sbjct: 729 NVSGLPAETEIAYHHTLSASNSYVFTDLVDNPDSMLKSTLKYRFVFKFSPSQPLSSL 785
>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 32 TNKNLKYFFFSLRCSVFKYNVWRSQTSLQE 121
T +LKY++ S CS F YN + S S E
Sbjct: 143 TTIDLKYWYCS--CSQFSYNAFNSSRSFDE 170
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 4.6
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +3
Query: 447 LTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSGSTEN 596
L ++N + + LTN A GSSG + AV+ L+G GS+ N
Sbjct: 473 LFQNRNLLTKLAQSGVLTNAAQGSSGG----LSAAAVSGLIGSFMGSSSN 518
>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 432
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 225 NLPGTNAAGAASQEDINISPSDCITPDMVLAVYLDNPEEQ 344
NLP + AG+A + S +C+T + L LD P ++
Sbjct: 380 NLPNFSEAGSAKSSNFCSSKDNCLTNRLTLNC-LDTPSDE 418
>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 364
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +3
Query: 105 KHRYKNVGLSADELR--RRREEEGVQLRKQKREQQL 206
K R ++ + D L+ +RR EG + RK +REQ L
Sbjct: 248 KSRIVHIDEAIDRLKEVKRRRIEGFERRKMRREQNL 283
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 25.8 bits (54), Expect = 6.0
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +3
Query: 459 KNPTLQFEAAWALTNIASGSSGQTRIVVD--YGAV-NVLVGLLSGSTENV 599
+N + FEAA AL SGS Q ++++ Y + N+ + GS E V
Sbjct: 1247 ENALVHFEAAAALAPTKSGSGSQQALLIEPHYALLSNLSKAAIEGSVEIV 1296
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 132 SADELRRRREEEGVQLRKQKREQQLFKRRNVNLPGTN 242
S +EL+R +EE RK+K+ + K+ + P +
Sbjct: 54 SVEELKRSADEEASVKRKEKKSKHEHKKHKKDKPSAD 90
>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 566
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 273 NISPSDCITPDMVLAVYLDNPEEQVIATQKFRKLLSKEPN 392
N++ S+ + D++ Y D P + RKLL K+ N
Sbjct: 428 NMTFSNILHKDVIFPEYADAPSISSLCKNLIRKLLVKDEN 467
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,610,628
Number of Sequences: 5004
Number of extensions: 49884
Number of successful extensions: 229
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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