Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23h22
(705 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 156 1e-38
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 156 1e-38
U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha ... 131 5e-31
AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta... 131 5e-31
AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alph... 131 5e-31
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 119 2e-27
Z73908-4|CAA98127.2| 447|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z74043-9|CAA98540.1| 524|Caenorhabditis elegans Hypothetical pr... 34 0.086
AF040997-1|AAB97173.1| 524|Caenorhabditis elegans importin alph... 34 0.086
Z70205-1|CAA94117.2| 460|Caenorhabditis elegans Hypothetical pr... 30 1.4
AC024137-2|AAK09075.1| 1603|Caenorhabditis elegans Vitellogenin ... 29 2.4
AC024137-1|AAK09074.1| 1603|Caenorhabditis elegans Vitellogenin ... 29 2.4
X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogen... 29 4.3
U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin st... 29 4.3
AF047656-8|AAC05109.2| 340|Caenorhabditis elegans Ligand-gated ... 29 4.3
AF000299-6|AAC47978.1| 297|Caenorhabditis elegans Hypothetical ... 29 4.3
Z35595-5|CAA84636.1| 952|Caenorhabditis elegans Hypothetical pr... 28 5.7
AF036692-5|AAS47681.1| 319|Caenorhabditis elegans Serpentine re... 28 7.5
AL023815-2|CAD92383.1| 146|Caenorhabditis elegans Hypothetical ... 27 9.9
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 156 bits (379), Expect = 1e-38
Identities = 90/198 (45%), Positives = 119/198 (60%), Gaps = 1/198 (0%)
Frame = +3
Query: 90 MSGGHKHRYKNVGLSADELRRRREEEGVQLRKQKREQQLFKRRNVNLPGTNAAGAASQED 269
MS + YKN + +R EE V +RK KRE+ + KRRN+N T +
Sbjct: 1 MSSNRQAYYKN-NAKEQIGKEKRNEEVVSIRKDKREEAISKRRNIN---TQIEDDSETST 56
Query: 270 INISPSDC-ITPDMVLAVYLDNPEEQVIATQKFRKLLSKEPNPPIDAVIQSGIVPKFIEF 446
P D + V A +P EQ+ A Q+ RK+LS + NPPID +I SGI+P ++
Sbjct: 57 TPPGPFDANLLRLTVAAAQSSDPAEQLTAVQQARKMLSTDRNPPIDDLIGSGILPVLVQC 116
Query: 447 LTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSGSTENVCEQAVWALG 626
L++ +P LQFEAAWALTNIASG+S QT+ VV+ GAV + + LLS NVCEQ+VWALG
Sbjct: 117 LSS-TDPNLQFEAAWALTNIASGTSEQTQAVVNAGAVPLFLQLLSCGNLNVCEQSVWALG 175
Query: 627 NIAGDSPYCRDIVLAAGV 680
NI GD P+ RD L G+
Sbjct: 176 NIIGDGPHFRDYCLELGI 193
Score = 56.4 bits (130), Expect = 2e-08
Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Frame = +3
Query: 390 NPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLV 569
N I VI++ +V + L H + +Q A A+ NI +G+ QT++V+D G + +
Sbjct: 267 NEHIQMVIEAQVVTHLVPLL-GHVDVKVQTAALRAVGNIVTGTDEQTQLVLDSGVLRFMP 325
Query: 570 GLLSGSTENVCEQAVWALGNI-AGDSPYCRDIVLAAGVSPTL 692
GLL+ E + ++AVW + NI AG+ +D V AG+ P +
Sbjct: 326 GLLAHYKEKINKEAVWFVSNITAGNQQQVQD-VFDAGIMPMI 366
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +3
Query: 399 IDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIA-SGSSGQTRIVVDYGAVNVLVGL 575
+ V +GI+P I L PT Q EAAWA++N+ SG Q +V G + +
Sbjct: 354 VQDVFDAGIMPMIIHLLDRGDFPT-QKEAAWAISNVTISGRPNQVEQMVKLGVLRPFCAM 412
Query: 576 LSGSTENVCEQAVWALGNI 632
LS + + + + + NI
Sbjct: 413 LSCTDSQIIQVVLDGINNI 431
Score = 31.9 bits (69), Expect = 0.46
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +3
Query: 537 VVDYGAVNVLVGLLSGSTENVCEQAVWALGNIAGDSPYCRDIVLAAGVSP 686
++ G + VLV LS + N+ +A WAL NIA + V+ AG P
Sbjct: 104 LIGSGILPVLVQCLSSTDPNLQFEAAWALTNIASGTSEQTQAVVNAGAVP 153
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 156 bits (379), Expect = 1e-38
Identities = 90/198 (45%), Positives = 119/198 (60%), Gaps = 1/198 (0%)
Frame = +3
Query: 90 MSGGHKHRYKNVGLSADELRRRREEEGVQLRKQKREQQLFKRRNVNLPGTNAAGAASQED 269
MS + YKN + +R EE V +RK KRE+ + KRRN+N T +
Sbjct: 1 MSSNRQAYYKN-NAKEQIGKEKRNEEVVSIRKDKREEAISKRRNIN---TQIEDDSETST 56
Query: 270 INISPSDC-ITPDMVLAVYLDNPEEQVIATQKFRKLLSKEPNPPIDAVIQSGIVPKFIEF 446
P D + V A +P EQ+ A Q+ RK+LS + NPPID +I SGI+P ++
Sbjct: 57 TPPGPFDANLLRLTVAAAQSSDPAEQLTAVQQARKMLSTDRNPPIDDLIGSGILPVLVQC 116
Query: 447 LTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSGSTENVCEQAVWALG 626
L++ +P LQFEAAWALTNIASG+S QT+ VV+ GAV + + LLS NVCEQ+VWALG
Sbjct: 117 LSS-TDPNLQFEAAWALTNIASGTSEQTQAVVNAGAVPLFLQLLSCGNLNVCEQSVWALG 175
Query: 627 NIAGDSPYCRDIVLAAGV 680
NI GD P+ RD L G+
Sbjct: 176 NIIGDGPHFRDYCLELGI 193
Score = 56.4 bits (130), Expect = 2e-08
Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Frame = +3
Query: 390 NPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLV 569
N I VI++ +V + L H + +Q A A+ NI +G+ QT++V+D G + +
Sbjct: 267 NEHIQMVIEAQVVTHLVPLL-GHVDVKVQTAALRAVGNIVTGTDEQTQLVLDSGVLRFMP 325
Query: 570 GLLSGSTENVCEQAVWALGNI-AGDSPYCRDIVLAAGVSPTL 692
GLL+ E + ++AVW + NI AG+ +D V AG+ P +
Sbjct: 326 GLLAHYKEKINKEAVWFVSNITAGNQQQVQD-VFDAGIMPMI 366
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +3
Query: 399 IDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIA-SGSSGQTRIVVDYGAVNVLVGL 575
+ V +GI+P I L PT Q EAAWA++N+ SG Q +V G + +
Sbjct: 354 VQDVFDAGIMPMIIHLLDRGDFPT-QKEAAWAISNVTISGRPNQVEQMVKLGVLRPFCAM 412
Query: 576 LSGSTENVCEQAVWALGNI 632
LS + + + + + NI
Sbjct: 413 LSCTDSQIIQVVLDGINNI 431
Score = 31.9 bits (69), Expect = 0.46
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +3
Query: 537 VVDYGAVNVLVGLLSGSTENVCEQAVWALGNIAGDSPYCRDIVLAAGVSP 686
++ G + VLV LS + N+ +A WAL NIA + V+ AG P
Sbjct: 104 LIGSGILPVLVQCLSSTDPNLQFEAAWALTNIASGTSEQTQAVVNAGAVP 153
>U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha
family protein 2 protein.
Length = 531
Score = 131 bits (316), Expect = 5e-31
Identities = 80/197 (40%), Positives = 112/197 (56%), Gaps = 6/197 (3%)
Frame = +3
Query: 96 GGHKHRYKNVGLSADELRRRREEEGVQLRKQKREQQLFKRRN---VNLPGTNAAGAASQE 266
GG +YKN+ +ELRRRR E V++RKQK + KRRN V+ G + + E
Sbjct: 19 GGRLQQYKNL-TKHEELRRRRTECSVEIRKQKGADMMMKRRNIVDVDEGGNSESELEEPE 77
Query: 267 DINISPSDC-ITPDMVLAVYLDNPEEQ--VIATQKFRKLLSKEPNPPIDAVIQSGIVPKF 437
I+ S ++ D + A+ +NP E V + RK LSK NPPID VI G++
Sbjct: 78 KISHQQSSTRLSNDEIRAILSNNPSEDDMVRCFESLRKSLSKTKNPPIDEVIHCGLLQAL 137
Query: 438 IEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSGSTENVCEQAVW 617
++ L+ +N +Q+EAAWALTNI SGS+ QT V+ G L+ L + + EQA+W
Sbjct: 138 VQALSV-ENERVQYEAAWALTNIVSGSTEQTIAAVEAGVTIPLIHLSVHQSAQISEQALW 196
Query: 618 ALGNIAGDSPYCRDIVL 668
A+ NIAGDS RD V+
Sbjct: 197 AVANIAGDSSQLRDYVI 213
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/107 (25%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Frame = +3
Query: 375 LSKEPNPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGA 554
L+ P+ I+ +SG++P + F +N L A L N+A+G+ T+ V+D G+
Sbjct: 288 LTDGPDEQIELARESGVLPHVVAFFKEAEN--LVAPALRTLGNVATGNDSLTQAVIDLGS 345
Query: 555 VNVLVGLLSGS-TENVCEQAVWALGNIAGDSPYCRDIVLAAGVSPTL 692
++ ++ L+ + + ++ ++ W + NI + VL A + P L
Sbjct: 346 LDEILPLMEKTRSSSIVKECCWLVSNIIAGTQKQIQAVLDANLLPVL 392
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/77 (27%), Positives = 40/77 (51%)
Frame = +3
Query: 405 AVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSG 584
AVI G + + + + ++ ++ E W ++NI +G+ Q + V+D + VL+ +L
Sbjct: 339 AVIDLGSLDEILPLMEKTRSSSIVKECCWLVSNIIAGTQKQIQAVLDANLLPVLINVLKS 398
Query: 585 STENVCEQAVWALGNIA 635
+A WAL N+A
Sbjct: 399 GDHKCQFEASWALSNLA 415
Score = 35.5 bits (78), Expect = 0.037
Identities = 23/59 (38%), Positives = 33/59 (55%)
Frame = +3
Query: 399 IDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGL 575
I AV+ + ++P I L + + QFEA+WAL+N+A G G R VV NV+ L
Sbjct: 380 IQAVLDANLLPVLINVLKSGDHKC-QFEASWALSNLAQG--GTNRQVVAMLEDNVVPAL 435
Score = 34.3 bits (75), Expect = 0.086
Identities = 24/91 (26%), Positives = 43/91 (47%)
Frame = +3
Query: 306 MVLAVYLDNPEEQVIATQKFRKLLSKEPNPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEA 485
+V A+ ++N Q A ++S I A +++G+ I L+ H++ + +A
Sbjct: 137 LVQALSVENERVQYEAAWALTNIVSGSTEQTI-AAVEAGVTIPLIH-LSVHQSAQISEQA 194
Query: 486 AWALTNIASGSSGQTRIVVDYGAVNVLVGLL 578
WA+ NIA SS V+ V L+ L+
Sbjct: 195 LWAVANIAGDSSQLRDYVIKCHGVEALMHLM 225
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +3
Query: 537 VVDYGAVNVLVGLLSGSTENVCEQAVWALGNIAGDSPYCRDIVLAAGVS 683
V+ G + LV LS E V +A WAL NI S + AGV+
Sbjct: 128 VIHCGLLQALVQALSVENERVQYEAAWALTNIVSGSTEQTIAAVEAGVT 176
>AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta
binding domain proteinprotein.
Length = 531
Score = 131 bits (316), Expect = 5e-31
Identities = 80/197 (40%), Positives = 112/197 (56%), Gaps = 6/197 (3%)
Frame = +3
Query: 96 GGHKHRYKNVGLSADELRRRREEEGVQLRKQKREQQLFKRRN---VNLPGTNAAGAASQE 266
GG +YKN+ +ELRRRR E V++RKQK + KRRN V+ G + + E
Sbjct: 19 GGRLQQYKNL-TKHEELRRRRTECSVEIRKQKGADMMMKRRNIVDVDEGGNSESELEEPE 77
Query: 267 DINISPSDC-ITPDMVLAVYLDNPEEQ--VIATQKFRKLLSKEPNPPIDAVIQSGIVPKF 437
I+ S ++ D + A+ +NP E V + RK LSK NPPID VI G++
Sbjct: 78 KISHQQSSTRLSNDEIRAILSNNPSEDDMVRCFESLRKSLSKTKNPPIDEVIHCGLLQAL 137
Query: 438 IEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSGSTENVCEQAVW 617
++ L+ +N +Q+EAAWALTNI SGS+ QT V+ G L+ L + + EQA+W
Sbjct: 138 VQALSV-ENERVQYEAAWALTNIVSGSTEQTIAAVEAGVTIPLIHLSVHQSAQISEQALW 196
Query: 618 ALGNIAGDSPYCRDIVL 668
A+ NIAGDS RD V+
Sbjct: 197 AVANIAGDSSQLRDYVI 213
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/107 (25%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Frame = +3
Query: 375 LSKEPNPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGA 554
L+ P+ I+ +SG++P + F +N L A L N+A+G+ T+ V+D G+
Sbjct: 288 LTDGPDEQIELARESGVLPHVVAFFKEAEN--LVAPALRTLGNVATGNDSLTQAVIDLGS 345
Query: 555 VNVLVGLLSGS-TENVCEQAVWALGNIAGDSPYCRDIVLAAGVSPTL 692
++ ++ L+ + + ++ ++ W + NI + VL A + P L
Sbjct: 346 LDEILPLMEKTRSSSIVKECCWLVSNIIAGTQKQIQAVLDANLLPVL 392
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/77 (27%), Positives = 40/77 (51%)
Frame = +3
Query: 405 AVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSG 584
AVI G + + + + ++ ++ E W ++NI +G+ Q + V+D + VL+ +L
Sbjct: 339 AVIDLGSLDEILPLMEKTRSSSIVKECCWLVSNIIAGTQKQIQAVLDANLLPVLINVLKS 398
Query: 585 STENVCEQAVWALGNIA 635
+A WAL N+A
Sbjct: 399 GDHKCQFEASWALSNLA 415
Score = 35.5 bits (78), Expect = 0.037
Identities = 23/59 (38%), Positives = 33/59 (55%)
Frame = +3
Query: 399 IDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGL 575
I AV+ + ++P I L + + QFEA+WAL+N+A G G R VV NV+ L
Sbjct: 380 IQAVLDANLLPVLINVLKSGDHKC-QFEASWALSNLAQG--GTNRQVVAMLEDNVVPAL 435
Score = 34.3 bits (75), Expect = 0.086
Identities = 24/91 (26%), Positives = 43/91 (47%)
Frame = +3
Query: 306 MVLAVYLDNPEEQVIATQKFRKLLSKEPNPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEA 485
+V A+ ++N Q A ++S I A +++G+ I L+ H++ + +A
Sbjct: 137 LVQALSVENERVQYEAAWALTNIVSGSTEQTI-AAVEAGVTIPLIH-LSVHQSAQISEQA 194
Query: 486 AWALTNIASGSSGQTRIVVDYGAVNVLVGLL 578
WA+ NIA SS V+ V L+ L+
Sbjct: 195 LWAVANIAGDSSQLRDYVIKCHGVEALMHLM 225
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +3
Query: 537 VVDYGAVNVLVGLLSGSTENVCEQAVWALGNIAGDSPYCRDIVLAAGVS 683
V+ G + LV LS E V +A WAL NI S + AGV+
Sbjct: 128 VIHCGLLQALVQALSVENERVQYEAAWALTNIVSGSTEQTIAAVEAGVT 176
>AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alpha 2
protein.
Length = 531
Score = 131 bits (316), Expect = 5e-31
Identities = 80/197 (40%), Positives = 112/197 (56%), Gaps = 6/197 (3%)
Frame = +3
Query: 96 GGHKHRYKNVGLSADELRRRREEEGVQLRKQKREQQLFKRRN---VNLPGTNAAGAASQE 266
GG +YKN+ +ELRRRR E V++RKQK + KRRN V+ G + + E
Sbjct: 19 GGRLQQYKNL-TKHEELRRRRTECSVEIRKQKGADMMMKRRNIVDVDEGGNSESELEEPE 77
Query: 267 DINISPSDC-ITPDMVLAVYLDNPEEQ--VIATQKFRKLLSKEPNPPIDAVIQSGIVPKF 437
I+ S ++ D + A+ +NP E V + RK LSK NPPID VI G++
Sbjct: 78 KISHQQSSTRLSNDEIRAILSNNPSEDDMVRCFESLRKSLSKTKNPPIDEVIHCGLLQAL 137
Query: 438 IEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSGSTENVCEQAVW 617
++ L+ +N +Q+EAAWALTNI SGS+ QT V+ G L+ L + + EQA+W
Sbjct: 138 VQALSV-ENERVQYEAAWALTNIVSGSTEQTIAAVEAGVTIPLIHLSVHQSAQISEQALW 196
Query: 618 ALGNIAGDSPYCRDIVL 668
A+ NIAGDS RD V+
Sbjct: 197 AVANIAGDSSQLRDYVI 213
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/107 (25%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Frame = +3
Query: 375 LSKEPNPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGA 554
L+ P+ I+ +SG++P + F +N L A L N+A+G+ T+ V+D G+
Sbjct: 288 LTDGPDEQIELARESGVLPHVVAFFKEAEN--LVAPALRTLGNVATGNDSLTQAVIDLGS 345
Query: 555 VNVLVGLLSGS-TENVCEQAVWALGNIAGDSPYCRDIVLAAGVSPTL 692
++ ++ L+ + + ++ ++ W + NI + VL A + P L
Sbjct: 346 LDEILPLMEKTRSSSIVKECCWLVSNIIAGTQKQIQAVLDANLLPVL 392
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/77 (27%), Positives = 40/77 (51%)
Frame = +3
Query: 405 AVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSG 584
AVI G + + + + ++ ++ E W ++NI +G+ Q + V+D + VL+ +L
Sbjct: 339 AVIDLGSLDEILPLMEKTRSSSIVKECCWLVSNIIAGTQKQIQAVLDANLLPVLINVLKS 398
Query: 585 STENVCEQAVWALGNIA 635
+A WAL N+A
Sbjct: 399 GDHKCQFEASWALSNLA 415
Score = 35.5 bits (78), Expect = 0.037
Identities = 23/59 (38%), Positives = 33/59 (55%)
Frame = +3
Query: 399 IDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGL 575
I AV+ + ++P I L + + QFEA+WAL+N+A G G R VV NV+ L
Sbjct: 380 IQAVLDANLLPVLINVLKSGDHKC-QFEASWALSNLAQG--GTNRQVVAMLEDNVVPAL 435
Score = 34.3 bits (75), Expect = 0.086
Identities = 24/91 (26%), Positives = 43/91 (47%)
Frame = +3
Query: 306 MVLAVYLDNPEEQVIATQKFRKLLSKEPNPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEA 485
+V A+ ++N Q A ++S I A +++G+ I L+ H++ + +A
Sbjct: 137 LVQALSVENERVQYEAAWALTNIVSGSTEQTI-AAVEAGVTIPLIH-LSVHQSAQISEQA 194
Query: 486 AWALTNIASGSSGQTRIVVDYGAVNVLVGLL 578
WA+ NIA SS V+ V L+ L+
Sbjct: 195 LWAVANIAGDSSQLRDYVIKCHGVEALMHLM 225
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +3
Query: 537 VVDYGAVNVLVGLLSGSTENVCEQAVWALGNIAGDSPYCRDIVLAAGVS 683
V+ G + LV LS E V +A WAL NI S + AGV+
Sbjct: 128 VIHCGLLQALVQALSVENERVQYEAAWALTNIVSGSTEQTIAAVEAGVT 176
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 119 bits (286), Expect = 2e-27
Identities = 59/103 (57%), Positives = 76/103 (73%)
Frame = +3
Query: 372 LLSKEPNPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYG 551
+LS + NPPID +I SGI+P ++ L++ +P LQFEAAWALTNIASG+S QT+ VV+ G
Sbjct: 1 MLSTDRNPPIDDLIGSGILPVLVQCLSS-TDPNLQFEAAWALTNIASGTSEQTQAVVNAG 59
Query: 552 AVNVLVGLLSGSTENVCEQAVWALGNIAGDSPYCRDIVLAAGV 680
AV + + LLS NVCEQ+VWALGNI GD P+ RD L G+
Sbjct: 60 AVPLFLQLLSCGNLNVCEQSVWALGNIIGDGPHFRDYCLELGI 102
Score = 56.4 bits (130), Expect = 2e-08
Identities = 34/102 (33%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Frame = +3
Query: 390 NPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLV 569
N I VI++ +V + L H + +Q A A+ NI +G+ QT++V+D G + +
Sbjct: 176 NEHIQMVIEAQVVTHLVPLL-GHVDVKVQTAALRAVGNIVTGTDEQTQLVLDSGVLRFMP 234
Query: 570 GLLSGSTENVCEQAVWALGNI-AGDSPYCRDIVLAAGVSPTL 692
GLL+ E + ++AVW + NI AG+ +D V AG+ P +
Sbjct: 235 GLLAHYKEKINKEAVWFVSNITAGNQQQVQD-VFDAGIMPMI 275
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +3
Query: 399 IDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIA-SGSSGQTRIVVDYGAVNVLVGL 575
+ V +GI+P I L PT Q EAAWA++N+ SG Q +V G + +
Sbjct: 263 VQDVFDAGIMPMIIHLLDRGDFPT-QKEAAWAISNVTISGRPNQVEQMVKLGVLRPFCAM 321
Query: 576 LSGSTENVCEQAVWALGNI 632
LS + + + + + NI
Sbjct: 322 LSCTDSQIIQVVLDGINNI 340
Score = 31.9 bits (69), Expect = 0.46
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +3
Query: 537 VVDYGAVNVLVGLLSGSTENVCEQAVWALGNIAGDSPYCRDIVLAAGVSP 686
++ G + VLV LS + N+ +A WAL NIA + V+ AG P
Sbjct: 13 LIGSGILPVLVQCLSSTDPNLQFEAAWALTNIASGTSEQTQAVVNAGAVP 62
>Z73908-4|CAA98127.2| 447|Caenorhabditis elegans Hypothetical
protein F53B2.5 protein.
Length = 447
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +3
Query: 474 QFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSGSTENVCEQAVWALGNIAGDSPYC 653
+ A W +TN+ S T + V+ +++L+ L+ + Q VWA+ NIA D C
Sbjct: 58 EVNAVWIITNMCCISQEVTHLFVNSNCLDILIKLVRSQNARLSSQTVWAIANIAADCSSC 117
Query: 654 R 656
+
Sbjct: 118 K 118
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +3
Query: 462 NPTLQFEAAWALTNIASGSSGQTRIVVDYGAVN---VLVGLLSGSTENVCEQAVWALGNI 632
+P EAAW ++N+ +G+ ++D V+ G+ +G + + ++ +W +GN+
Sbjct: 274 SPEHHSEAAWIISNVVAGAPRHVDYIMDDPDAFYEWVMAGIHTGD-KRLRKECLWIIGNL 332
>Z74043-9|CAA98540.1| 524|Caenorhabditis elegans Hypothetical
protein T19B10.7 protein.
Length = 524
Score = 34.3 bits (75), Expect = 0.086
Identities = 13/39 (33%), Positives = 26/39 (66%)
Frame = +3
Query: 114 YKNVGLSADELRRRREEEGVQLRKQKREQQLFKRRNVNL 230
YK+ +E+RR+R E+ VQ+RK +R+++ + R + +
Sbjct: 16 YKSNVRDQNEMRRKRREDEVQIRKNRRDEKFERNRQITV 54
>AF040997-1|AAB97173.1| 524|Caenorhabditis elegans importin alpha 1
protein.
Length = 524
Score = 34.3 bits (75), Expect = 0.086
Identities = 13/39 (33%), Positives = 26/39 (66%)
Frame = +3
Query: 114 YKNVGLSADELRRRREEEGVQLRKQKREQQLFKRRNVNL 230
YK+ +E+RR+R E+ VQ+RK +R+++ + R + +
Sbjct: 16 YKSNVRDQNEMRRKRREDEVQIRKNRRDEKFERNRQITV 54
>Z70205-1|CAA94117.2| 460|Caenorhabditis elegans Hypothetical
protein C11H1.2 protein.
Length = 460
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Frame = +2
Query: 53 FFFSLRCSVFKYNVWR-----SQTSLQECWTEC 136
F FSL CS+F+ ++ TS Q+CWT C
Sbjct: 46 FTFSLSCSLFELIIFEIADILDPTSRQKCWTNC 78
>AC024137-2|AAK09075.1| 1603|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 3 protein.
Length = 1603
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +3
Query: 126 GLSADELRRRREEEGVQLRKQKREQQLFKRRNVNLPGTNAAGA----ASQEDINISPSDC 293
G +DELR RR + G+Q+ ++ ++ + R NA + D + P D
Sbjct: 726 GKQSDELRSRRVQSGIQMLQEIVKKMNIRPRVQQTDSQNAHAVFYLRYKEMDYIVLPIDM 785
Query: 294 ITPDMVLAVYLDNPE 338
T D V+ Y+ N E
Sbjct: 786 ETIDNVVEKYVRNGE 800
>AC024137-1|AAK09074.1| 1603|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 4 protein.
Length = 1603
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +3
Query: 126 GLSADELRRRREEEGVQLRKQKREQQLFKRRNVNLPGTNAAGA----ASQEDINISPSDC 293
G +DELR RR + G+Q+ ++ ++ + R NA + D + P D
Sbjct: 726 GKQSDELRSRRVQSGIQMLQEIVKKMNIRPRVQQTDSQNAHAVFYLRYKEMDYIVLPIDM 785
Query: 294 ITPDMVLAVYLDNPE 338
T D V+ Y+ N E
Sbjct: 786 ETIDNVVEKYVRNGE 800
>X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogenin
protein.
Length = 1603
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +3
Query: 126 GLSADELRRRREEEGVQLRKQKREQQLFKRRNVNLPGTNAAGA----ASQEDINISPSDC 293
G +DELR RR + G+Q+ ++ ++ + R NA + D + P D
Sbjct: 726 GKQSDELRSRRVQSGIQMLQEIVKKMNIRPRVQQTDSQNAHAVFYLRYKEMDYIVLPIDM 785
Query: 294 ITPDMVLAVYLDNPE 338
T D ++ Y+ N E
Sbjct: 786 ETIDTLVEKYVRNGE 800
>U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 5 protein.
Length = 1603
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +3
Query: 126 GLSADELRRRREEEGVQLRKQKREQQLFKRRNVNLPGTNAAGA----ASQEDINISPSDC 293
G +DELR RR + G+Q+ ++ ++ + R NA + D + P D
Sbjct: 726 GKQSDELRSRRVQSGIQMLQEIVKKMNIRPRVQQTDSQNAHAVFYLRYKEMDYIVLPIDM 785
Query: 294 ITPDMVLAVYLDNPE 338
T D ++ Y+ N E
Sbjct: 786 ETIDTLVEKYVRNGE 800
>AF047656-8|AAC05109.2| 340|Caenorhabditis elegans Ligand-gated ion
channel protein 5 protein.
Length = 340
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Frame = +3
Query: 267 DINISPSDC-----ITPDMVLAVYLDNPEEQVIATQKF 365
D+N+ PSD ITP+ L + +D +E ++ +Q+F
Sbjct: 41 DVNVKPSDTLTTVTITPNTFLLLSMDQTQETILFSQEF 78
>AF000299-6|AAC47978.1| 297|Caenorhabditis elegans Hypothetical
protein E03H12.2 protein.
Length = 297
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +3
Query: 534 IVVDYGAVNVLVGLLSGSTENVCEQAVWALGNIAGDSPYCRDI 662
I + VN + T C +W++GN S YC+D+
Sbjct: 108 ITYEKSCVNSTFRMFPRPTGPFCLDVLWSVGNRVKSSTYCKDL 150
>Z35595-5|CAA84636.1| 952|Caenorhabditis elegans Hypothetical
protein C01G6.5 protein.
Length = 952
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +3
Query: 117 KNVG-LSADELRRRREEEGVQLRKQKREQQLFKRRNVNLPGTNAAGAASQEDINISPSDC 293
KN G DEL RR+EE V + ++ E Q + R + + + A D IS S
Sbjct: 312 KNKGSFKVDELSRRKEELAVMM--EEEEPQTIEIRELLVSLSEKAQDVQSNDFTISASSA 369
Query: 294 IT 299
T
Sbjct: 370 FT 371
>AF036692-5|AAS47681.1| 319|Caenorhabditis elegans Serpentine
receptor, class x protein13 protein.
Length = 319
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -2
Query: 467 WILMVCQEFNKFWYNSRL--YNCINWRIRFLT*KLSELLCCYDLFF 336
W + C F FWY+ YN I+W F + ++ Y ++
Sbjct: 151 WFIAFCHIFPYFWYDKCFITYNPISWTWNFAPTECGHVISTYTDYY 196
>AL023815-2|CAD92383.1| 146|Caenorhabditis elegans Hypothetical
protein H28O16.1b protein.
Length = 146
Score = 27.5 bits (58), Expect = 9.9
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -2
Query: 455 VCQEFNKFWYNSRLYNCINW 396
VC N +W R ++C NW
Sbjct: 123 VCARTNGYWSQGRRFSCANW 142
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,679,184
Number of Sequences: 27780
Number of extensions: 287520
Number of successful extensions: 988
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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