Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23h18
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical pr...   183   1e-46
Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical p...   126   1e-29
Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical pr...    31   0.67 
Z77131-7|CAB00857.2| 1034|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z46381-11|CAA86520.2| 1034|Caenorhabditis elegans Hypothetical p...    31   1.2  
U42835-6|AAA83589.2|  816|Caenorhabditis elegans Dehydrogenases,...    30   1.6  
AF106576-4|AAC78176.1|  473|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical pr...    28   6.3  

>L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical
           protein F54H12.6 protein.
          Length = 213

 Score =  183 bits (445), Expect = 1e-46
 Identities = 100/204 (49%), Positives = 126/204 (61%), Gaps = 3/204 (1%)
 Frame = +2

Query: 74  VGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQIAS 250
           V DVK+  GL   N  LAE+++ +G+  S  D Q+F  +G AP A+  P+V RWY  +AS
Sbjct: 2   VADVKSPAGLAAFNTTLAEQAFATGFVLSGEDAQLFAALGSAPNASTYPNVARWYANVAS 61

Query: 251 YTPAERKTWSQ--GTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXX 424
           YT AERKTW+   G++P                      DLFGS                
Sbjct: 62  YTDAERKTWASAGGSAPAAAAADGDDF------------DLFGSDDEEEDAEKAKIVEER 109

Query: 425 LKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGY 604
           L AYA+KK+KK   IAKSS++LDVKPWDDETD+ EME  VR+IEM+GL+WG +KL+P+GY
Sbjct: 110 LAAYAEKKAKKAGPIAKSSVILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGY 169

Query: 605 GINKLQIMCVIEDDKVSVDLLTEK 676
           GI KLQI+ VIED KVSVD L EK
Sbjct: 170 GIKKLQIITVIEDLKVSVDDLIEK 193



 Score = 32.7 bits (71), Expect = 0.29
 Identities = 15/22 (68%), Positives = 17/22 (77%)
 Frame = +3

Query: 669 QKKIQEFEDFVQSVDIAAFNKI 734
           +K   +FED VQSVDI AFNKI
Sbjct: 192 EKITGDFEDHVQSVDIVAFNKI 213


>Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical
           protein Y41E3.10a protein.
          Length = 263

 Score =  126 bits (305), Expect = 1e-29
 Identities = 63/105 (60%), Positives = 74/105 (70%)
 Frame = +2

Query: 362 DLFGSGXXXXXXXXXXXXXXXLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQ 541
           DLFGS                L AYA KK+ K   IAKSS++LDVKPWDDETD+ EME  
Sbjct: 139 DLFGSEDEEEDEEKKKVVEERLAAYAAKKATKAGPIAKSSVILDVKPWDDETDLGEMEKL 198

Query: 542 VRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEK 676
           VR+IEM+GL+WG +KL+P+GYGI KLQI+ VIED KVSVD L EK
Sbjct: 199 VRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIEDLKVSVDDLIEK 243



 Score = 32.7 bits (71), Expect = 0.29
 Identities = 15/22 (68%), Positives = 17/22 (77%)
 Frame = +3

Query: 669 QKKIQEFEDFVQSVDIAAFNKI 734
           +K   +FED VQSVDI AFNKI
Sbjct: 242 EKITGDFEDHVQSVDIVAFNKI 263


>Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical
           protein AC3.3 protein.
          Length = 425

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 263 QPECMKQFDYTIVVRGEG*RPAPCQLAQILEHQLEKECIQTRSFSQ 126
           QP CM   + + VV+     PAP Q     + Q +++C+QT+   Q
Sbjct: 130 QPSCMPACEQSCVVQ----TPAPVQCVPQCQQQCQQQCVQTQPIQQ 171


>Z77131-7|CAB00857.2| 1034|Caenorhabditis elegans Hypothetical protein
            M01F1.7 protein.
          Length = 1034

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +2

Query: 80   DVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTP 259
            D +   G  D+ +Y  E+ Y+  Y  ++ D+Q           N PH L ++N   S  P
Sbjct: 866  DPRVRPGAVDVVRYWQEQGYLIIYLTARPDMQQRVVSAWLAQHNFPHALLFFNNSFSTEP 925

Query: 260  AERKT 274
             ++K+
Sbjct: 926  LKQKS 930


>Z46381-11|CAA86520.2| 1034|Caenorhabditis elegans Hypothetical
            protein M01F1.7 protein.
          Length = 1034

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +2

Query: 80   DVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTP 259
            D +   G  D+ +Y  E+ Y+  Y  ++ D+Q           N PH L ++N   S  P
Sbjct: 866  DPRVRPGAVDVVRYWQEQGYLIIYLTARPDMQQRVVSAWLAQHNFPHALLFFNNSFSTEP 925

Query: 260  AERKT 274
             ++K+
Sbjct: 926  LKQKS 930


>U42835-6|AAA83589.2|  816|Caenorhabditis elegans Dehydrogenases,
           short chain protein27 protein.
          Length = 816

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 22/67 (32%), Positives = 33/67 (49%)
 Frame = +2

Query: 479 SILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSV 658
           SI+L VKP DDE  ++++ NQ     M G LW A++     Y   ++     I    V V
Sbjct: 436 SIMLCVKPADDEI-VQKIRNQ-----MSGALWSAAQFAVTSYVCVRVLKFLYIMCKSVLV 489

Query: 659 DLLTEKN 679
             +T K+
Sbjct: 490 HFITPKH 496


>AF106576-4|AAC78176.1|  473|Caenorhabditis elegans Hypothetical
           protein W07E6.2 protein.
          Length = 473

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +2

Query: 554 EMEGLLWGASKLVPVGYGINKLQIMC----VIEDDKVSVDLLTEKNSRI 688
           E E  L G+  LVPV    N+LQI+C       DD V +   T + + I
Sbjct: 14  EDENELGGSGILVPVDISTNELQILCNQLLGSSDDPVPISFFTTEGAEI 62


>Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical
           protein AC3.4 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 263 QPECMKQFDYTIVVRGEG*RPAPCQLAQILEHQLEKECIQTRSFSQ 126
           QP CM   + + VV+     PA  Q     + Q +++C+QT+   Q
Sbjct: 130 QPSCMPACEQSCVVQ----TPAAVQCVPQCQQQCQQQCVQTQPIQQ 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,089,319
Number of Sequences: 27780
Number of extensions: 325758
Number of successful extensions: 982
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)