Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23h13
         (107 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    25   1.3  
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces...    25   1.3  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    24   3.1  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    23   5.3  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    22   9.3  

>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 97  AYEKTYDIYFNYLHHKCSQLY 35
           AYE  +D  F+ L H+ S++Y
Sbjct: 798 AYESNFDGLFDSLEHEASEVY 818


>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 7/26 (26%), Positives = 19/26 (73%)
 Frame = -3

Query: 84  LMIFILTIYITNAVNCTHSYIK*KHY 7
           + +F++   +++ V+C+ ++I+ KHY
Sbjct: 247 IKVFLVPYNVSSMVDCSKTWIRQKHY 272


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 73  YFNYLHHKCSQLYSFIHKVKTLSN 2
           Y NY+ H    L SF  +   LSN
Sbjct: 179 YINYITHLYEYLVSFYRRTHPLSN 202


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -3

Query: 87  KLMIFILTIYITNAVNCTHSY 25
           +++IFI  + ++ A+ CT +Y
Sbjct: 574 RIVIFIFALVVSMAIYCTAAY 594


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -2

Query: 97  AYEKTYDIYFNYLHHKCSQLYSFIHKVKTLSN 2
           AY+    I  +YL  +C  L + I+++   +N
Sbjct: 842 AYQALEQIRVHYLIRRCEALTNIINRISFRNN 873


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 365,030
Number of Sequences: 5004
Number of extensions: 3399
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 17
effective length of database: 2,277,410
effective search space used: 40993380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)