Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23h13
         (107 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    20   3.2  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        19   5.6  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    18   9.8  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          18   9.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      18   9.8  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    18   9.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    18   9.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    18   9.8  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    18   9.8  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -3

Query: 99  LLMKKLMIFILTIYITNAVN 40
           LLM+ L +FIL + +++ ++
Sbjct: 102 LLMRLLKMFILPLIVSSLIS 121


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +1

Query: 73  KYHKFFHKQK 102
           KYH+ FH Q+
Sbjct: 8   KYHQQFHHQQ 17


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 76  IYFNYLHHKCSQL 38
           +YFN +  KC +L
Sbjct: 114 MYFNLIDTKCYKL 126


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -2

Query: 43  QLYSFIHK 20
           QLY F+HK
Sbjct: 259 QLYYFLHK 266


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -2

Query: 43  QLYSFIHK 20
           QLY F+HK
Sbjct: 259 QLYYFLHK 266


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 76  IYFNYLHHKCSQL 38
           +YFN +  KC +L
Sbjct: 119 MYFNLIDTKCYKL 131


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 64  YLHHKCSQLYSFIHKV 17
           Y  HK ++LY+ + K+
Sbjct: 332 YAQHKENELYANLMKI 347


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -2

Query: 64  YLHHKCSQLYSFIHKV 17
           Y  HK ++LY+ + K+
Sbjct: 370 YAQHKENELYANLMKI 385


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 76  IYFNYLHHKCSQL 38
           +YFN +  KC +L
Sbjct: 119 MYFNLIDTKCYKL 131


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,335
Number of Sequences: 438
Number of extensions: 276
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 16
effective length of database: 139,335
effective search space used:  2647365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)