Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23h11
(212 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 28 0.15
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch... 25 1.4
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 25 1.4
SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1... 25 1.4
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 25 1.8
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch... 25 1.8
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 25 1.8
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 24 3.1
SPCC285.04 |||transthyretin |Schizosaccharomyces pombe|chr 3|||M... 24 3.1
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos... 24 3.1
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom... 23 4.2
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom... 23 5.5
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 23 5.5
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 23 5.5
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 23 7.3
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc... 23 7.3
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 28.3 bits (60), Expect = 0.15
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -2
Query: 202 EFYNLIKLLHYKNMSDSIYIIQSFSKKEISTIQNYNLPLLLTPHALT 62
E Y+L H+K + + Q S + ST +NY +PL +T H ++
Sbjct: 431 EAYSLSSKFHFKK--EILIASQLSSHLDYSTFKNYLMPLAITLHFIS 475
>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 577
Score = 25.0 bits (52), Expect = 1.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 145 IIQSFSKKEISTIQNYNLPLLLTP 74
II S I IQNYN P+++ P
Sbjct: 384 IIGCLSIARILAIQNYNAPMIIYP 407
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 25.0 bits (52), Expect = 1.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 118 ISTIQNYNLPLLLTPHALTSGWPD 47
I+++ NY LP+ LT A T+ W D
Sbjct: 444 INSLANYGLPIWLTEFACTN-WDD 466
>SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 318
Score = 25.0 bits (52), Expect = 1.4
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -2
Query: 184 KLLHYKNMSDSIYIIQSFSKKEISTIQNYNLPLLLTPHALTSGWPDV 44
+L+ N++ I+ S KKE+ +I + L+ + L S W DV
Sbjct: 159 RLIDIANVNSDRQIVLSGDKKELESITSTLSELVRSLGKLRSNWLDV 205
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1095
Score = 24.6 bits (51), Expect = 1.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 139 QSFSKKEISTIQNYNLPLLLTPH 71
+ KKE+S + + LPLL PH
Sbjct: 403 EKLMKKELSRVLDMVLPLLADPH 425
>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 794
Score = 24.6 bits (51), Expect = 1.8
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 151 WNQTYSYNEEVLLNY 195
W + Y E+VLLNY
Sbjct: 120 WRSVHHYGEDVLLNY 134
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 24.6 bits (51), Expect = 1.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 127 KKEISTIQNYNLPLLLTPHAL 65
KK + I N LPLLLTP L
Sbjct: 98 KKNLVQIYNILLPLLLTPSLL 118
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 23.8 bits (49), Expect = 3.1
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = -1
Query: 119 NIYDTKLQPPIAIDAARAHVRL 54
++YDT+++ P A ++ +HV L
Sbjct: 190 SLYDTEVRNPSAAESTNSHVSL 211
>SPCC285.04 |||transthyretin |Schizosaccharomyces pombe|chr
3|||Manual
Length = 124
Score = 23.8 bits (49), Expect = 3.1
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -2
Query: 106 QNYNLPLLLTPHALTS 59
Q+Y++PLLL P+ T+
Sbjct: 105 QHYHIPLLLAPYGYTT 120
>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
glycosyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 450
Score = 23.8 bits (49), Expect = 3.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 119 NIYDTKLQPPIAIDAARAHVRLAG 48
N+YD LQPP+ +R + AG
Sbjct: 92 NVYDIPLQPPVKPGESRTLLIQAG 115
>SPCC663.10 |||methyltransferase, DUF1613 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 502
Score = 23.4 bits (48), Expect = 4.2
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 133 SFVLYRWNQTYSYNEE 180
+F++ W QTYS N+E
Sbjct: 261 AFLIELWKQTYSSNKE 276
>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 23.0 bits (47), Expect = 5.5
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -2
Query: 139 QSFSKKEISTIQNYNLPLLLTPHAL 65
+ SK++ + NY PL LTP +
Sbjct: 274 EPLSKQDTDILSNYINPLYLTPDGI 298
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 202 EFYNLIKLLHYKNMSD 155
EFY+LIK L K SD
Sbjct: 577 EFYSLIKFLRIKPYSD 592
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 23.0 bits (47), Expect = 5.5
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = -2
Query: 187 IKLLHYKNMSDSIYIIQSFSKKEISTIQNYNLPLLLTPHALTSGWPDVES 38
+K++ + DS+ + S+K + NYN L A+ + W D+++
Sbjct: 320 VKIIVNFDKVDSLRVQSPRSEKATIELDNYNPSLENCSSAVIALWEDIKT 369
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 22.6 bits (46), Expect = 7.3
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -1
Query: 146 YNTKLFEKGNIYDTKLQP 93
++T+ FEKG + KL+P
Sbjct: 277 FDTEAFEKGGHFYAKLEP 294
>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 22.6 bits (46), Expect = 7.3
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = -2
Query: 202 EFYNLIKLLHYKNMSDSIYIIQSFSKKEISTIQNYNLPLLLTPHALTSGWPDVESRERY 26
++ L+K H M ++ + + S EI+ LLL +AL S D RE Y
Sbjct: 51 KYIELVKKHHPDKMKNASQLAPTESPPEINKHNEEYFRLLLAANALLS---DKRRREEY 106
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 778,184
Number of Sequences: 5004
Number of extensions: 12647
Number of successful extensions: 45
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 50
effective length of database: 2,112,278
effective search space used: 42245560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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