Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23h11
         (212 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY122148-1|AAM52660.1|  695|Drosophila melanogaster LD03368p pro...    29   0.67 
AE013599-2165|AAS64841.1|  695|Drosophila melanogaster CG8400-PB...    29   0.67 
AE013599-2164|AAF58073.1|  695|Drosophila melanogaster CG8400-PA...    29   0.67 

>AY122148-1|AAM52660.1|  695|Drosophila melanogaster LD03368p
           protein.
          Length = 695

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 124 FSKSFVLYRWNQTYSYNEEVLLN 192
           F + FVLY W+ TY  N+++ L+
Sbjct: 444 FKEKFVLYGWDMTYESNKDMFLS 466


>AE013599-2165|AAS64841.1|  695|Drosophila melanogaster CG8400-PB,
           isoform B protein.
          Length = 695

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 124 FSKSFVLYRWNQTYSYNEEVLLN 192
           F + FVLY W+ TY  N+++ L+
Sbjct: 444 FKEKFVLYGWDMTYESNKDMFLS 466


>AE013599-2164|AAF58073.1|  695|Drosophila melanogaster CG8400-PA,
           isoform A protein.
          Length = 695

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 124 FSKSFVLYRWNQTYSYNEEVLLN 192
           F + FVLY W+ TY  N+++ L+
Sbjct: 444 FKEKFVLYGWDMTYESNKDMFLS 466


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,546,114
Number of Sequences: 53049
Number of extensions: 108121
Number of successful extensions: 273
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 24,988,368
effective HSP length: 50
effective length of database: 22,335,918
effective search space used: 446718360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)