Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23h11
(212 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023835-8|CAA19491.1| 483|Caenorhabditis elegans Hypothetical ... 27 1.4
Z82274-7|CAD21646.1| 331|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z70684-5|CAA94600.1| 233|Caenorhabditis elegans Hypothetical pr... 27 2.4
Z70684-3|CAA94598.1| 233|Caenorhabditis elegans Hypothetical pr... 27 2.4
AL021497-5|CAA16399.1| 141|Caenorhabditis elegans Hypothetical ... 26 4.2
Z81124-11|CAB03370.2| 306|Caenorhabditis elegans Hypothetical p... 25 5.5
Z73098-9|CAA97335.1| 141|Caenorhabditis elegans Hypothetical pr... 25 5.5
Z81542-4|CAB04418.1| 233|Caenorhabditis elegans Hypothetical pr... 25 7.3
Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical p... 25 7.3
Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical p... 25 7.3
U39471-1|AAA80132.4| 461|Caenorhabditis elegans Intestinal acid... 25 7.3
AF043693-6|AAB97539.1| 640|Caenorhabditis elegans Hypothetical ... 25 9.7
>AL023835-8|CAA19491.1| 483|Caenorhabditis elegans Hypothetical
protein Y37A1B.8 protein.
Length = 483
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 202 EFYNLIKLLHYKNMSDSIYIIQSFSKKEISTIQNYNLP 89
E N +K L+Y + D Y+IQ S K ++++ NLP
Sbjct: 394 ENLNFLKYLNYIALFDDEYVIQILSNKNLTSV---NLP 428
>Z82274-7|CAD21646.1| 331|Caenorhabditis elegans Hypothetical
protein JC8.13 protein.
Length = 331
Score = 27.1 bits (57), Expect = 1.8
Identities = 15/62 (24%), Positives = 28/62 (45%)
Frame = -2
Query: 208 FFEFYNLIKLLHYKNMSDSIYIIQSFSKKEISTIQNYNLPLLLTPHALTSGWPDVESRER 29
FF+ + + L ++SD + I++ + K IS + P+ P L S W +
Sbjct: 233 FFDIFQQLDPLLKHSLSDCVSILRQSAMKNISVA--FKTPVARLPSQLLSDWLGFPANLE 290
Query: 28 YF 23
+F
Sbjct: 291 FF 292
>Z70684-5|CAA94600.1| 233|Caenorhabditis elegans Hypothetical
protein F28D1.5 protein.
Length = 233
Score = 26.6 bits (56), Expect = 2.4
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -2
Query: 121 EISTIQNYNLPLLLTPH 71
++S + YNLP+L+ PH
Sbjct: 117 DVSLVDGYNLPVLIDPH 133
>Z70684-3|CAA94598.1| 233|Caenorhabditis elegans Hypothetical
protein F28D1.3 protein.
Length = 233
Score = 26.6 bits (56), Expect = 2.4
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -2
Query: 121 EISTIQNYNLPLLLTPH 71
++S + YNLP+L+ PH
Sbjct: 117 DVSLVDGYNLPVLIDPH 133
>AL021497-5|CAA16399.1| 141|Caenorhabditis elegans Hypothetical
protein Y51A2D.9 protein.
Length = 141
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -1
Query: 137 KLFEKGNIYDTKL 99
KLFE G IYDTK+
Sbjct: 47 KLFEDGTIYDTKM 59
>Z81124-11|CAB03370.2| 306|Caenorhabditis elegans Hypothetical
protein T21B4.1 protein.
Length = 306
Score = 25.4 bits (53), Expect = 5.5
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -2
Query: 196 YNLIKLLHYKNMS-DSIYIIQSFSKKEISTIQNYNLPLLLTPHALTSGWPDVE 41
+ + L + NM+ +IY + F +S I N+ L +L L PD E
Sbjct: 65 FQTVSLFFWPNMNIQTIYYMYQFLMSTVSPIFNFLLAILALQRFLIFFLPDFE 117
>Z73098-9|CAA97335.1| 141|Caenorhabditis elegans Hypothetical
protein T21C9.8 protein.
Length = 141
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -1
Query: 137 KLFEKGNIYDTKL 99
KL+E G IYDTKL
Sbjct: 46 KLYEDGTIYDTKL 58
>Z81542-4|CAB04418.1| 233|Caenorhabditis elegans Hypothetical
protein F49A5.6 protein.
Length = 233
Score = 25.0 bits (52), Expect = 7.3
Identities = 6/20 (30%), Positives = 14/20 (70%)
Frame = -2
Query: 121 EISTIQNYNLPLLLTPHALT 62
++S + YN+P+ + PH ++
Sbjct: 117 DVSMVDGYNIPVFIQPHGVS 136
>Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 199 FYNLIKLLHYKNMSDSIYIIQSFSKKEI 116
F+ ++ L+YK +D I ++QSF I
Sbjct: 16 FWPTVESLNYKCHNDQILVVQSFGNDTI 43
>Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 199 FYNLIKLLHYKNMSDSIYIIQSFSKKEI 116
F+ ++ L+YK +D I ++QSF I
Sbjct: 16 FWPTVESLNYKCHNDQILVVQSFGNDTI 43
>U39471-1|AAA80132.4| 461|Caenorhabditis elegans Intestinal acid
phosphatase protein4 protein.
Length = 461
Score = 25.0 bits (52), Expect = 7.3
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = -2
Query: 199 FYNLIKLLHYKNMSDSIYIIQSFSKKEISTIQNYNLPLLLTPHALTSGWPDVESRERYF 23
+ N +K Y ++Y + S +Q PL + AL W DV++ + YF
Sbjct: 322 YTNRLKFFAYSAHDTTLYALFSLLGVAKLAVQPRGYPLY-SACALFEQWQDVQTNQTYF 379
>AF043693-6|AAB97539.1| 640|Caenorhabditis elegans Hypothetical
protein C34B2.7 protein.
Length = 640
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = -2
Query: 205 FEFYNLIKLLHYKNMSDSIYIIQSFSKKEISTIQNYNLPLLLT 77
+ FY+ +K + D+I+ + +++ I ++NY +P T
Sbjct: 95 WHFYDTVKGSDWLGDQDAIHYMTREAERAIIELENYGMPFSRT 137
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,089,306
Number of Sequences: 27780
Number of extensions: 63082
Number of successful extensions: 173
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 12,740,198
effective HSP length: 50
effective length of database: 11,351,198
effective search space used: 227023960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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