Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23h11
         (212 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   2.2  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    20   2.9  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          20   3.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    19   5.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    19   5.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      19   5.1  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              19   6.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   8.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   8.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    19   8.9  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 2.2
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 118 FPFSKSFVLYRWN 156
           F ++K  V+Y+WN
Sbjct: 151 FGYTKRDVIYKWN 163


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 20.2 bits (40), Expect = 2.9
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -1

Query: 128 EKGNIYDTKLQPPIAIDAARAHVRL 54
           +KG+  D  + PP+  D A  + ++
Sbjct: 238 KKGSAIDLDIGPPLHADQAEEYKKI 262


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 151 WNQTYSYNEEVLLNYKIQ 204
           W   + YN E  LNY I+
Sbjct: 208 WYLNHDYNLENKLNYFIE 225


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.4 bits (38), Expect = 5.1
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +3

Query: 78  VNSNGRL*FCIVDISFFEKLCII 146
           V +NG +   + D S+F ++C++
Sbjct: 504 VMANGEVATSLSDGSYFGEICLL 526


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 19.4 bits (38), Expect = 5.1
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +3

Query: 78  VNSNGRL*FCIVDISFFEKLCII 146
           V +NG +   + D S+F ++C++
Sbjct: 472 VMANGEVATSLSDGSYFGEICLL 494


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 19.4 bits (38), Expect = 5.1
 Identities = 8/39 (20%), Positives = 14/39 (35%)
 Frame = -3

Query: 120 KYLRYKITTSHCY*RRTRSRQAGRTLNPEKDIFSASFLT 4
           +Y+ +     HC    T         NP   + +A  +T
Sbjct: 299 RYIDFLFQVLHCNMENTEGADDASERNPRSAVLAAREIT 337


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 19.0 bits (37), Expect = 6.7
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 163 MSDSIYIIQSFSKKEISTIQ 104
           +   ++ +QS   KEI T Q
Sbjct: 22  LKSGLHTVQSVCMKEIGTAQ 41


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 18.6 bits (36), Expect = 8.9
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 102 FCIVDISFFEKLCI 143
           FC++ + FFE + I
Sbjct: 453 FCLLFLMFFECIAI 466


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 18.6 bits (36), Expect = 8.9
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 102 FCIVDISFFEKLCI 143
           FC++ + FFE + I
Sbjct: 506 FCLLFLMFFECIAI 519


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 18.6 bits (36), Expect = 8.9
 Identities = 5/14 (35%), Positives = 12/14 (85%)
 Frame = -2

Query: 121  EISTIQNYNLPLLL 80
            +++ ++N+N PLL+
Sbjct: 1027 DMNALKNFNQPLLV 1040


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,952
Number of Sequences: 438
Number of extensions: 898
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  3165825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)