Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23h10
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 241 6e-65
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 142 4e-35
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 138 8e-34
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 134 2e-32
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 124 1e-29
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 116 4e-27
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 112 5e-26
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 32 0.078
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 29 0.73
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 27 3.9
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha... 26 6.8
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 26 6.8
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 25 9.0
>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 241 bits (591), Expect = 6e-65
Identities = 116/214 (54%), Positives = 153/214 (71%), Gaps = 1/214 (0%)
Frame = +3
Query: 120 GFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPASVT 299
GFDR IT+FSPEGRLYQVEYA KA N G+TSV + G + A V +Q+KVPD+L+D ++V
Sbjct: 6 GFDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVK 65
Query: 300 HLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQ 479
H+F +T IGCVMTG IAD+R+QV RAR EAA ++YK G +P +L +R+A+I+QV TQ
Sbjct: 66 HVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQ 125
Query: 480 NAEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAKTVDGNAYLEKKLKKRS 659
A MRPLG +M L+A DDE GP ++K DP+G+Y YKA +AG K + +LEK+ KK
Sbjct: 126 RAAMRPLGVAMTLVAVDDEIGPSLFKLDPAGFYIGYKATSAGPKQTETINWLEKRFKKDG 185
Query: 660 DLST-DDAIQLAISCLSQVLSVDFKSSEIEIGVV 758
S D ++ I L LS DFKS+E++IGVV
Sbjct: 186 IPSNLTDTVETGIQALMSSLSTDFKSTELQIGVV 219
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 142 bits (345), Expect = 4e-35
Identities = 84/211 (39%), Positives = 118/211 (55%), Gaps = 2/211 (0%)
Frame = +3
Query: 135 ITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPASVTHLFAL 314
+T FSP G+L Q+EYAL A+N G+TSV ++ TD V+A ++K L AS+ + A+
Sbjct: 9 LTTFSPNGKLVQIEYALNAVN-AGVTSVGIKATDGVVLATEKKPTSELAIGASLEKVCAI 67
Query: 315 TDRIGCVMTGMIADSRSQVQRARYEAANWQYK--YGSEIPVHILCRRIADISQVYTQNAE 488
T IG V +GM D R V ++R + A YK Y P IL + IA + Q TQ+
Sbjct: 68 TPDIGMVYSGMGPDFRVLVDKSR-KVAQTTYKKIYNEYPPTKILVQEIASVMQESTQSGG 126
Query: 489 MRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAKTVDGNAYLEKKLKKRSDLS 668
+RP G S+ L+A DE GP +Y+ DPSG Y ++KA A G + +LEK+ +L
Sbjct: 127 VRPFGVSL-LVAGMDEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRY--NDELE 183
Query: 669 TDDAIQLAISCLSQVLSVDFKSSEIEIGVVS 761
DDA+ AI L + + IEI VVS
Sbjct: 184 LDDAVHTAILALKETFEGELTEDNIEIAVVS 214
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 138 bits (334), Expect = 8e-34
Identities = 74/215 (34%), Positives = 124/215 (57%), Gaps = 1/215 (0%)
Frame = +3
Query: 117 AGFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPASV 296
+G+DR +++FSP+GRL QVEY +A+ +G T++ALRG + V+ +RK +L + ++
Sbjct: 2 SGYDRALSVFSPDGRLLQVEYGQEAVRRG-TTAIALRGNECIVIGVERKNVPKLQNVSNF 60
Query: 297 THLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYT 476
+ + + + G+ AD+R + +AR EA N + + + L R +A + Q YT
Sbjct: 61 QKIAMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQKYT 120
Query: 477 QNAEMRPLGCSMMLIAYD-DEAGPCVYKTDPSGYYCSYKAVAAGAKTVDGNAYLEKKLKK 653
Q+ +RP G S ++ +D + P VY+T+P+G Y ++KA A G + YLEK K+
Sbjct: 121 QSGGVRPFGVSTLIAGFDVGDNTPRVYQTEPAGIYNAWKATAIGRASKAAREYLEKNWKE 180
Query: 654 RSDLSTDDAIQLAISCLSQVLSVDFKSSEIEIGVV 758
LS D+ I LA+S L +V V S IE+ ++
Sbjct: 181 --GLSRDETIHLAVSSLLEV--VQTASGNIELAIM 211
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 134 bits (323), Expect = 2e-32
Identities = 74/219 (33%), Positives = 122/219 (55%), Gaps = 2/219 (0%)
Frame = +3
Query: 114 SAGFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLD-PA 290
S +D TIFSPEGRLYQVEYAL+AIN G+ ++ + D V+AA++KV +LL+
Sbjct: 2 SRSYDSRTTIFSPEGRLYQVEYALEAINHAGV-ALGIVAKDGIVLAAEKKVTSKLLEQEE 60
Query: 291 SVTHLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQV 470
S L+ + D + C + G+ AD+ + AR + + E+P L RR+ D+ Q
Sbjct: 61 SAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQG 120
Query: 471 YTQNAEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAKTVDGNAYLEKKLK 650
YTQ +RP G S + +D G +++++PSG Y S++A + G + + + ++ K
Sbjct: 121 YTQYGGLRPFGVSFLYAGWDHIRGYQLFQSNPSGNYGSWQANSIGGNSTSVQSLMRQEYK 180
Query: 651 KRSDLSTDDAIQLAISCLSQVL-SVDFKSSEIEIGVVSK 764
D++ D+A +A+ LS+ L S +IE ++K
Sbjct: 181 --DDINLDEASAMAVKFLSKTLDSNSLTHEKIEFATITK 217
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 124 bits (300), Expect = 1e-29
Identities = 69/219 (31%), Positives = 123/219 (56%), Gaps = 6/219 (2%)
Frame = +3
Query: 123 FDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPASVTH 302
+DR + FSPEGRL+QVEYA++AI G T++ ++ DA V+ ++++ L++ SV
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGVKTKDAVVLGVEKRLTSPLMESHSVEK 66
Query: 303 LFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQN 482
LF + IGC ++G+ AD+R+ ++ AR + N ++ Y + + I D++ + +
Sbjct: 67 LFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEG 126
Query: 483 AE------MRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAKTVDGNAYLEKK 644
+ RP G + +LIA DE GP +Y ++PSG Y Y+A A G+ + + L K+
Sbjct: 127 EDGEERIMSRPFGVA-LLIAGIDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKE 185
Query: 645 LKKRSDLSTDDAIQLAISCLSQVLSVDFKSSEIEIGVVS 761
K D++ ++A L + L QV+ S +++ V+
Sbjct: 186 FHK--DMTLEEAEVLILKVLRQVMEEKLDSKNVQLAKVT 222
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 116 bits (279), Expect = 4e-27
Identities = 67/195 (34%), Positives = 101/195 (51%)
Frame = +3
Query: 120 GFDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPASVT 299
G+D + FSP+GRL+Q EYA KA+ T + ++ D ++A ++ V +LL P
Sbjct: 7 GYDLGL-FFSPDGRLFQAEYAYKAVENAS-TCIGIKCEDGVILALEKVVTSKLLKPRVNN 64
Query: 300 HLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQ 479
+ ++ IG TG I D + V+RAR EA +W+ YGS IP ++ R+ + Q++T
Sbjct: 65 RIGSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLFTC 124
Query: 480 NAEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAKTVDGNAYLEKKLKKRS 659
+ +RP G + YD E GP +Y +P+G Y Y AAG LEK S
Sbjct: 125 YSSVRPFGVMSFVATYDSE-GPHLYMVEPNGVYWGYNGAAAGKGRQVARNELEK--LNFS 181
Query: 660 DLSTDDAIQLAISCL 704
L DA++ A L
Sbjct: 182 SLKMKDAVKEAARIL 196
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 112 bits (270), Expect = 5e-26
Identities = 69/216 (31%), Positives = 110/216 (50%), Gaps = 2/216 (0%)
Frame = +3
Query: 123 FDRHITIFSPEGRLYQVEYALKAINQGGLTSVALRGTDAAVVAAQRKVPDRLLDPASVTH 302
+D T +SP+GRL+QVEYAL+AI QG T + T A +VA +R + +
Sbjct: 6 YDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEEL---SSYQKK 62
Query: 303 LFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQN 482
L + D IG + G+ D+R + EA + + + IPV L ++A+ +Q+ TQ
Sbjct: 63 LIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQE 122
Query: 483 AEMRPLGCSMMLIAYDDEAGPCVYKTDPSGYYCSYKAVAAGAKTVDGNAYLEKKLKKRSD 662
RP G ++I Y DE+GP + + PSG Y + G+++ Y+E+ L D
Sbjct: 123 YGRRPYGVGFLVIGY-DESGPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIERNLDTFPD 181
Query: 663 LSTDDAIQLAISCLSQVLSVDFKSSE--IEIGVVSK 764
S ++ I A+ L LS D + +E + I V+ K
Sbjct: 182 SSREELILSALRALRDTLSKDQELTEENVSISVIGK 217
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 32.3 bits (70), Expect = 0.078
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +2
Query: 362 VSSTTSSLRGCQLAVQVW--VRDTCAYLMQTHS*YLSSLHPKCRDETSGL 505
++S ++ ++G QLA ++W +RDTC++L + Y+ S+ +D L
Sbjct: 520 IASNSAKIQG-QLATEIWAVLRDTCSFLQGSSGPYVGSVSTIAKDALESL 568
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 29.1 bits (62), Expect = 0.73
Identities = 15/62 (24%), Positives = 25/62 (40%)
Frame = +3
Query: 342 GMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADISQVYTQNAEMRPLGCSMMLI 521
GM +R+ Q +E +W Y + V LCR + ++ N + + LI
Sbjct: 606 GMCPYTRAVSQHVEWENDSWMYVLNVSLQVAKLCRHVGNVFMELNTNKLANAINYLISLI 665
Query: 522 AY 527
Y
Sbjct: 666 LY 667
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.6 bits (56), Expect = 3.9
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Frame = +3
Query: 288 ASVTHLFALTDRIGCVMTGMIADSRSQVQRARYEAANWQYKYGSEIPVHILCRRIADIS- 464
A++ +L+ +I CV AD Q QR + + + G P HI I + S
Sbjct: 508 ANLLNLYPDLQKIPCVFAATKADLDRQQQRYPVQPDEFTKQLGLPSPTHISTAAIWNTSK 567
Query: 465 QVYTQNAEMRPLGCSMMLIAYDDEAGPCVYK 557
+ + Q AE S ++ ++++ Y+
Sbjct: 568 EFFIQLAESAQYPASSIIRIPEEDSNKTNYQ 598
>SPBC32H8.09 |||WD repeat protein, human WDR8
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 116 TAFSSHSIYSISKIRLKFTKFYNATLTKEY 27
T F S S SKIR + Y AT+T +Y
Sbjct: 311 TDFPEPSFCSASKIRFNCDETYAATITSKY 340
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 6.8
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -1
Query: 295 TEAGSSSLSGTLR*AATTAASVPRNATDVNPPWFIAFNAYST*YSLPS 152
T + SSS S AA +S ATD+ PP+ A ++ YS PS
Sbjct: 295 TASSSSSFSSKREEAAAEPSS--STATDIPPPYSTPSVAGASDYSTPS 340
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 396 WQPRSELVVLETGYQQSSR 340
WQP S + L TGY ++R
Sbjct: 205 WQPDSSQIFLTTGYDSTAR 223
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,911,781
Number of Sequences: 5004
Number of extensions: 55043
Number of successful extensions: 163
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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