Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23h07
(171 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 75 2e-15
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 75 2e-15
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 75 2e-15
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 75 2e-15
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 75 2e-15
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 48 1e-07
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 35 0.001
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe... 23 4.1
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 23 5.4
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 22 9.4
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc... 22 9.4
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 22 9.4
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz... 22 9.4
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 74.5 bits (175), Expect = 2e-15
Identities = 33/38 (86%), Positives = 37/38 (97%)
Frame = +1
Query: 4 DQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 117
DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 39 DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 74.5 bits (175), Expect = 2e-15
Identities = 33/38 (86%), Positives = 37/38 (97%)
Frame = +1
Query: 4 DQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 117
DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 39 DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 74.5 bits (175), Expect = 2e-15
Identities = 33/38 (86%), Positives = 37/38 (97%)
Frame = +1
Query: 4 DQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 117
DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 39 DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 74.5 bits (175), Expect = 2e-15
Identities = 33/38 (86%), Positives = 37/38 (97%)
Frame = +1
Query: 4 DQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 117
DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 39 DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 74.5 bits (175), Expect = 2e-15
Identities = 33/38 (86%), Positives = 37/38 (97%)
Frame = +1
Query: 4 DQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 117
DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 115 DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
Score = 74.5 bits (175), Expect = 2e-15
Identities = 33/38 (86%), Positives = 37/38 (97%)
Frame = +1
Query: 4 DQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 117
DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 191 DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
Score = 74.5 bits (175), Expect = 2e-15
Identities = 33/38 (86%), Positives = 37/38 (97%)
Frame = +1
Query: 4 DQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 117
DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 267 DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304
Score = 74.5 bits (175), Expect = 2e-15
Identities = 33/38 (86%), Positives = 37/38 (97%)
Frame = +1
Query: 4 DQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 117
DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 343 DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 74.5 bits (175), Expect = 2e-15
Identities = 33/38 (86%), Positives = 37/38 (97%)
Frame = +1
Query: 4 DQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 117
DQQRLIFAGKQLED +T++DYNIQKESTLH+VLRLRGG
Sbjct: 39 DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 48.4 bits (110), Expect = 1e-07
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = +1
Query: 7 QQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 117
QQRLI+AGKQ+ D K Y+++ S LH+VL LRGG
Sbjct: 40 QQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 35.1 bits (77), Expect = 0.001
Identities = 14/35 (40%), Positives = 25/35 (71%)
Frame = +1
Query: 4 DQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRL 108
++QRLI+AG+ L+D +++ Y IQ ++H+V L
Sbjct: 42 ERQRLIYAGRVLKDEESLKTYKIQDGHSIHLVKTL 76
>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 408
Score = 23.4 bits (48), Expect = 4.1
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +3
Query: 6 STKTYLCGQTIGRFQNYGRLQYSKG 80
S+ T CG F YG L Y G
Sbjct: 41 SSATVTCGGDANEFNEYGHLGYRIG 65
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 23.0 bits (47), Expect = 5.4
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +3
Query: 15 TYLCGQTIGRFQNYGRL 65
T L GQT GRF YG L
Sbjct: 792 TSLHGQTAGRFAWYGTL 808
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +3
Query: 51 NYGRLQYSKG 80
NYGRLQY +G
Sbjct: 897 NYGRLQYLEG 906
>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 919
Score = 22.2 bits (45), Expect = 9.4
Identities = 6/20 (30%), Positives = 12/20 (60%)
Frame = +2
Query: 8 NKDLSLRANNWKIPKLWPIT 67
N S++ W +P+LW ++
Sbjct: 738 NAPYSMKPVKWNLPRLWGLS 757
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 22.2 bits (45), Expect = 9.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 93 VKSRFLLNIVIGHSFGIFQLFARKDKSLLI 4
V SRF+L + GHS + L + ++LL+
Sbjct: 248 VNSRFILYKLYGHSGSVLCLDFCRRRNLLV 277
>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 526
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 54 YGRLQYSKGIYSSHGVTITR 113
+GR +Y K YS + I+R
Sbjct: 128 FGRTEYGKRTYSGNSTKISR 147
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 589,888
Number of Sequences: 5004
Number of extensions: 7211
Number of successful extensions: 31
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 37
effective length of database: 2,177,330
effective search space used: 41369270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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