Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23h07
         (171 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    19   7.3  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    19   7.3  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    19   7.3  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    19   7.3  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    19   7.3  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +2

Query: 56  WPITIFKR 79
           WPI +FK+
Sbjct: 382 WPILLFKK 389


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 21  LCGQTIGRFQNYGRLQY 71
           L   TI    NY +LQY
Sbjct: 307 LLNNTIHNNNNYKKLQY 323


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 21  LCGQTIGRFQNYGRLQY 71
           L   TI    NY +LQY
Sbjct: 318 LLNNTIHNNNNYKKLQY 334


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 21  LCGQTIGRFQNYGRLQY 71
           L   TI    NY +LQY
Sbjct: 318 LLNNTIHNNNNYKKLQY 334


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 21  LCGQTIGRFQNYGRLQY 71
           L   TI    NY +LQY
Sbjct: 307 LLNNTIHNNNNYKKLQY 323


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,998
Number of Sequences: 438
Number of extensions: 433
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 36
effective length of database: 130,575
effective search space used:  2611500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)