Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23h02
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0778 + 21459483-21459778,21460531-21462784,21462992-21463432     32   0.52 
09_02_0462 + 9583558-9584910                                           31   0.69 
11_01_0435 + 3337840-3338494,3338950-3339313,3339733-3340009           31   1.2  
11_02_0061 + 7904260-7904824,7904935-7905470,7906184-7906861           29   4.9  
09_02_0219 - 5937469-5937733,5937825-5938027,5939515-5939544           29   4.9  
02_02_0336 + 9081958-9082222,9082466-9082569,9082632-9082681,908...    28   6.4  
12_02_0980 - 25018107-25018469,25018792-25018938,25019028-25020110     28   8.5  

>07_03_0778 + 21459483-21459778,21460531-21462784,21462992-21463432
          Length = 996

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -1

Query: 417 WLC*ASCTLDGWRPFLLWQHTDYSPRTVLMFLNILLKSYKTVTPRWTRALR 265
           WL    C LD W+  +   H +     VL  + ILL   K++TP++  +LR
Sbjct: 127 WLIAIVCILDVWKLLIPLPHKNVMAAVVLYAMIILLILGKSMTPKFQPSLR 177


>09_02_0462 + 9583558-9584910
          Length = 450

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +2

Query: 662 NVSDAFYRYKMPRICAKV 715
           N  DAFYRYKMPR+  K+
Sbjct: 10  NRDDAFYRYKMPRMITKI 27


>11_01_0435 + 3337840-3338494,3338950-3339313,3339733-3340009
          Length = 431

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/61 (32%), Positives = 32/61 (52%)
 Frame = -3

Query: 556 TGSSRSVRVRCSAGPGPAAVASHVCRSGSNFRCLLLQNFDVLRTVYLVVLSVMHPRRLAA 377
           T ++ +     SA   P+A++S +   G +FR + ++    L   YL   SV+ PR LAA
Sbjct: 135 TATTTTTTTSSSATSPPSALSSPLSSIGGSFRAMQIRK---LSGCYLHCHSVLDPRTLAA 191

Query: 376 V 374
           V
Sbjct: 192 V 192


>11_02_0061 + 7904260-7904824,7904935-7905470,7906184-7906861
          Length = 592

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 290 VTVLYDFSKIFRNISTVRGE*SVCCHRRN 376
           + V+ DF+ IFR +  + G   V CH RN
Sbjct: 149 IAVMRDFTDIFRKLLGIPGSAHVGCHGRN 177


>09_02_0219 - 5937469-5937733,5937825-5938027,5939515-5939544
          Length = 165

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 111 LINIYTTLYIRKFVTEKKRKLNNTLSYVSQTGF 13
           ++N+Y  +Y  K  ++  +K+N T   V  TG+
Sbjct: 132 ILNVYFYMYYTKSTSQAAKKINKTTPNVGMTGY 164


>02_02_0336 +
           9081958-9082222,9082466-9082569,9082632-9082681,
           9083484-9083566,9084129-9084257,9085821-9085881,
           9086010-9086826
          Length = 502

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 246 LASGEAAASRIAHAAPTFSLSMTGPPECSFKFNAI 142
           +A  EAAA++ A   P FS    G P   F FN++
Sbjct: 1   MAGSEAAAAQEAEMDPDFSGGGGGGPSFEFAFNSV 35


>12_02_0980 - 25018107-25018469,25018792-25018938,25019028-25020110
          Length = 530

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +3

Query: 324 ETSVLCAE---SSRCVATGGTAASRRGCMTLNTTRYTVRRTSKFCSNRHR 464
           E S LC +       +  GG    R  C  + TTR+++ + +++C+  HR
Sbjct: 157 EESGLCDDVIAHDAAMLNGGFEIGRVFCFRVETTRWSLEQLNRWCAALHR 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,501,345
Number of Sequences: 37544
Number of extensions: 395456
Number of successful extensions: 961
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)