Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23g24
         (484 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   6.9  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   6.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   6.9  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   9.1  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   9.1  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = -1

Query: 418 VRVTRVCDGEC--AHSVVFSACCS*F 347
           V VT  C+     AH VV SAC S F
Sbjct: 36  VDVTLACNEASLKAHKVVLSACSSYF 61


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = -1

Query: 100 VNANESSPRAQMEKKKGIT**LYTLWK 20
           V  + ++P A+  + +G+T   Y +W+
Sbjct: 377 VQVDPTAPNAEERRVQGVTKPRYMVWR 403


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = -1

Query: 100 VNANESSPRAQMEKKKGIT**LYTLWK 20
           V  + ++P A+  + +G+T   Y +W+
Sbjct: 292 VQVDPTAPNAEERRVQGVTKPRYMVWR 318


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = -1

Query: 100 VNANESSPRAQMEKKKGIT**LYTLWK 20
           V  + ++P A+  + +G+T   Y +W+
Sbjct: 611 VQVDPTAPNAEERRVQGVTKPRYMVWR 637


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 282 DFLSGGAFLAMITSFALPCRRV 217
           DFL+GG   A+  +   P  RV
Sbjct: 13  DFLAGGVAAAISKTTVAPIERV 34


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 282 DFLSGGAFLAMITSFALPCRRV 217
           DFL+GG   A+  +   P  RV
Sbjct: 13  DFLAGGVAAAISKTTVAPIERV 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,870
Number of Sequences: 438
Number of extensions: 2429
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)