Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23g14
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70855-1|AAB09161.1|  390|Caenorhabditis elegans Hypothetical pr...    77   2e-14
L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical p...    30   1.5  
U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis...    29   2.6  
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p...    28   7.8  

>U70855-1|AAB09161.1|  390|Caenorhabditis elegans Hypothetical
           protein K08F11.3 protein.
          Length = 390

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 58/204 (28%), Positives = 102/204 (50%), Gaps = 7/204 (3%)
 Frame = +3

Query: 141 VFMDISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFKEPSES-DIEA 317
           VF  I    Q  ELR+Y   L    S +  P G  +    ++ +C      PS S D++ 
Sbjct: 9   VFAYIDDVKQLQELRQY---LNKHDSVKLDPNGPSETAQNMIEICSTLNVLPSWSQDVDL 65

Query: 318 ILNSIVSIMVSIPLERGENLILAFSQRLT----KAPG-PKLGMVALQSLWRLYNNLEPNS 482
           +LNSI S++V +P E+ E ++ +F + +     K  G      +A++ L  LY       
Sbjct: 66  VLNSISSLIVVVPGEKCEPVVDSFIKNVAPQFYKGTGWASHAGIAVRVLSNLYKGYSNFH 125

Query: 483 PLRYHVYYHVIELAARVGFVREVFTGVEQLRKEFANCPPSNEQMQKLYRLLHQ-VLKDQN 659
            ++  ++  ++++ A    + E+   +E L+  F       E  +++ R +H+ +L DQ 
Sbjct: 126 TVQEKIFKALVDMCAEARLIGELECNLETLQDRFNTWKTPVEGQREILRAVHRALLVDQR 185

Query: 660 SELAAKVMIELLGTYTDENASYAR 731
            + AAKVM  LLGTYT+++A+ AR
Sbjct: 186 VDQAAKVMTALLGTYTEKDAAAAR 209


>L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical
            protein C14B9.8 protein.
          Length = 1226

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +3

Query: 543  REVFTGVEQLRKEFANCPPSNEQMQKLYRLLHQVLKDQNSELAAKVMIELLGT 701
            +++  G+   ++E   CP +NE+++K+    +    D NS   A+ +I  LG+
Sbjct: 873  KQITVGIASKKEEVITCPKTNEELEKIMNRAYG--DDANSFTLAQEIIVYLGS 923


>U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis
            transmembrane conductanceregulator homolog protein 1
            protein.
          Length = 1247

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 150  DISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFK 290
            DI L  +A +LR Y KSL   + +  SP+ + ++    V VC A  K
Sbjct: 1117 DIWLAIEACQLREYVKSLPDGLHQMVSPEKMSNEQKCQVNVCRALLK 1163


>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
            T28C6.9 protein.
          Length = 1861

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = +3

Query: 153  ISLEDQALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFKEPSESDIEAIL--N 326
            +SLEDQ LEL    + +  E+ +EK+ K   D   K+    +  + +  E D EA    N
Sbjct: 1256 LSLEDQNLELEERLQEMEEELLDEKNKKKEVD--AKVEQKSEENWGDWGEDDAEAATESN 1313

Query: 327  SIVSIMVSIPLERGENL 377
             +VS + S   E  + L
Sbjct: 1314 VVVSTLQSTVAELQDRL 1330


>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical protein
            F18C12.2b protein.
          Length = 2271

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 171  ALELRRYFKSLGAEISEEKSPKGIEDDLHKI 263
            A++L  Y K   AE++    PK I DDL +I
Sbjct: 1726 AIDLLDYIKKHSAELTGAPKPKAISDDLIEI 1756


>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical protein
            F18C12.2a protein.
          Length = 2279

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 171  ALELRRYFKSLGAEISEEKSPKGIEDDLHKI 263
            A++L  Y K   AE++    PK I DDL +I
Sbjct: 1726 AIDLLDYIKKHSAELTGAPKPKAISDDLIEI 1756


>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
            protein RME-8 protein.
          Length = 2279

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 171  ALELRRYFKSLGAEISEEKSPKGIEDDLHKI 263
            A++L  Y K   AE++    PK I DDL +I
Sbjct: 1726 AIDLLDYIKKHSAELTGAPKPKAISDDLIEI 1756


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,175,433
Number of Sequences: 27780
Number of extensions: 290060
Number of successful extensions: 958
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)