Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23g03
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    40   3e-04
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    36   0.008
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    29   0.90 
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    27   2.1  
SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|...    27   2.7  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   3.6  

>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 31/131 (23%), Positives = 61/131 (46%)
 Frame = +3

Query: 330 SGKNFFITGGTGFVGLCLIEKILRCIPDVGKVYLLMRPKKGKEISQRLEEFPKNLVFEKL 509
           +G+ F +TG TG+ G   +E +++   ++  V  L+R    +   +RL     +L     
Sbjct: 643 NGQYFLLTGATGYFGRRFLEYLVKL--NIS-VVCLVRESSDEAAKERLISLVPSLRISS- 698

Query: 510 LETNTTDIFKKLVPISGDVGEANLGLSPQDRQLLIENVNVVIHSAATLDFQENLRPTVRI 689
                    + ++  +  V E   GL     + L+ENV+ + H AA + + ++ +     
Sbjct: 699 ---------ENIIVWAAHVEEIRFGLDDAKWEFLVENVSRIYHMAAEVHWMKSYQELRPA 749

Query: 690 NLLGTRQVMGL 722
           N+LGT+ V+ L
Sbjct: 750 NVLGTKTVLEL 760


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 29/130 (22%), Positives = 62/130 (47%)
 Frame = +3

Query: 336  KNFFITGGTGFVGLCLIEKILRCIPDVGKVYLLMRPKKGKEISQRLEEFPKNLVFEKLLE 515
            K  F+TG  G++G+ ++  ++    ++ KV  L+R    +   +RL++   +     + +
Sbjct: 1005 KTVFLTGANGYLGVFILRDLMTRSSNL-KVIALVRASSEEHGLKRLKD---SCTAYGVWD 1060

Query: 516  TNTTDIFKKLVPISGDVGEANLGLSPQDRQLLIENVNVVIHSAATLDFQENLRPTVRINL 695
             +     +K+  ++GD+   N G+  +    L E V+ VIH+ A + +          N+
Sbjct: 1061 ESWA---QKISVVNGDLALENWGIEERKWNKLTEVVDYVIHNGALVHWVYPYSKLRGPNV 1117

Query: 696  LGTRQVMGLC 725
            +GT   + LC
Sbjct: 1118 MGTITALKLC 1127


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 123 SIIVDFDHWANTKTSKISTYKEFY*FI 43
           SII +FD W N + SKI   + FY F+
Sbjct: 49  SIIHEFDPWFNFRASKILVEQGFYNFL 75


>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 333 GKNFFITGGTGFVGLCLIEKILRCIPDVGKVYLLMRPKKGKEISQRLEE 479
           GK   ITGG+G +G  + +       +VG +Y   R KK  E +  L +
Sbjct: 9   GKTTLITGGSGGIGFSIAKAFAAAGSNVGLLY--GRNKKALEYAAELRD 55


>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 336

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 330 SGKNFFITGGTGFVGLCLIEKILR 401
           SGK   +TG TGF+G  + E++L+
Sbjct: 2   SGKLVLVTGVTGFIGAHVAEQLLQ 25


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 384  IEKILRCIPDVGKVYLLMRPKKGKEISQRLEE 479
            +EKIL+  PDV  +YL   P +   I Q L++
Sbjct: 2113 VEKILKSYPDVHVIYLCCDPSR-LNIEQELQK 2143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,608,202
Number of Sequences: 5004
Number of extensions: 49463
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)