Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23g03
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical ...   124   9e-29
Z68880-9|CAA93099.1|  255|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z68879-12|CAA93091.1|  255|Caenorhabditis elegans Hypothetical p...    31   1.1  
U50135-5|AAN63430.2|  346|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z79598-1|CAB01867.3|  586|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U40800-3|AAA81490.1|  467|Caenorhabditis elegans Squashed vulva ...    29   4.5  
AY147933-1|AAN39843.1|  467|Caenorhabditis elegans UDP-glucuroni...    29   4.5  

>AF098505-1|AAC67415.1|  536|Caenorhabditis elegans Hypothetical
           protein Y71H10A.2 protein.
          Length = 536

 Score =  124 bits (298), Expect = 9e-29
 Identities = 58/137 (42%), Positives = 91/137 (66%)
 Frame = +3

Query: 315 VRAFYSGKNFFITGGTGFVGLCLIEKILRCIPDVGKVYLLMRPKKGKEISQRLEEFPKNL 494
           VR  Y+G +  +TGGTGF+G  ++EK+L  I D+  +YL++R +KGK   +RL     + 
Sbjct: 5   VRDVYAGSSVLLTGGTGFLGKVIVEKLLWTIDDIQNIYLMIRTRKGKNPQERLSGLLHDP 64

Query: 495 VFEKLLETNTTDIFKKLVPISGDVGEANLGLSPQDRQLLIENVNVVIHSAATLDFQENLR 674
           +F ++ +    + F KL  I GD+   NLG+ P+D  L+ +NVNVVIHSAAT+ F E+LR
Sbjct: 65  LFNRIRQEKP-EAFDKLKAIGGDMMVENLGMDPEDVMLIRDNVNVVIHSAATVKFDEHLR 123

Query: 675 PTVRINLLGTRQVMGLC 725
             V +N++GT++++ LC
Sbjct: 124 AAVTMNVIGTKRIIDLC 140


>Z68880-9|CAA93099.1|  255|Caenorhabditis elegans Hypothetical
           protein K08F4.9 protein.
          Length = 255

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/84 (27%), Positives = 38/84 (45%)
 Frame = +3

Query: 336 KNFFITGGTGFVGLCLIEKILRCIPDVGKVYLLMRPKKGKEISQRLEEFPKNLVFEKLLE 515
           K  FITG    +GL L+ ++L+ +P V  +    R   G +  Q L +    L    +  
Sbjct: 4   KTIFITGANRGIGLGLVRELLK-VPGVEALVAGARNIDGAKELQSLAKADARLHLIAVDV 62

Query: 516 TNTTDIFKKLVPISGDVGEANLGL 587
           +N   +   +  +SG VG+  L L
Sbjct: 63  SNDGSLENSVKSVSGIVGDRGLNL 86


>Z68879-12|CAA93091.1|  255|Caenorhabditis elegans Hypothetical
           protein K08F4.9 protein.
          Length = 255

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/84 (27%), Positives = 38/84 (45%)
 Frame = +3

Query: 336 KNFFITGGTGFVGLCLIEKILRCIPDVGKVYLLMRPKKGKEISQRLEEFPKNLVFEKLLE 515
           K  FITG    +GL L+ ++L+ +P V  +    R   G +  Q L +    L    +  
Sbjct: 4   KTIFITGANRGIGLGLVRELLK-VPGVEALVAGARNIDGAKELQSLAKADARLHLIAVDV 62

Query: 516 TNTTDIFKKLVPISGDVGEANLGL 587
           +N   +   +  +SG VG+  L L
Sbjct: 63  SNDGSLENSVKSVSGIVGDRGLNL 86


>U50135-5|AAN63430.2|  346|Caenorhabditis elegans Hypothetical
           protein C52E12.6 protein.
          Length = 346

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = +2

Query: 515 NEHNRYLQEAG-PDLWRCW*GESRSKSSRPAAVDRERQCGY--TFGGNFRFSREFEAH 679
           NEHNRYL +   PD    +  ++  +         E+ C Y    G  FRF+RE   H
Sbjct: 166 NEHNRYLDQIECPDCHEFFLTQTALQKHMKEHKREEKHCPYKECRGIKFRFNRELNEH 223


>Z79598-1|CAB01867.3|  586|Caenorhabditis elegans Hypothetical
           protein C44H4.1 protein.
          Length = 586

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 462 SQRLEEFPKNLVFEKLLETNTTDIFKKL 545
           S RLE  P N++++ L++  T+ + +KL
Sbjct: 378 SNRLESLPSNVIYDSLMQKKTSPVQRKL 405


>U40800-3|AAA81490.1|  467|Caenorhabditis elegans Squashed vulva
           protein 1 protein.
          Length = 467

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 336 KNFFITGGTGFVGLCLIEKIL 398
           K   ITGG GFVG  L++K++
Sbjct: 137 KRILITGGAGFVGSHLVDKLM 157


>AY147933-1|AAN39843.1|  467|Caenorhabditis elegans UDP-glucuronic
           acid decarboxylase protein.
          Length = 467

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 336 KNFFITGGTGFVGLCLIEKIL 398
           K   ITGG GFVG  L++K++
Sbjct: 137 KRILITGGAGFVGSHLVDKLM 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,048,098
Number of Sequences: 27780
Number of extensions: 262004
Number of successful extensions: 592
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)