Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23f23
         (144 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar...    25   1.0  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    23   5.5  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    23   7.3  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    23   7.3  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    22   9.6  
SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces p...    22   9.6  

>SPBC800.06 |brx1||ribosome biogenesis protein
           Brx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 9   VPDLKNDNTCKLEINEQLYISSYIAESYNCKII 107
           +P  K D+  KL+  ++LY  + +AE YNC  I
Sbjct: 68  MPHSKKDS--KLDSKDRLYQLNELAELYNCNNI 98


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 42  LEINEQLYISSYIAESYNCKIIICEN 119
           L   E L ISSY+  S    ++ C N
Sbjct: 654 LSCTEMLNISSYVNPSLGVNMLYCTN 679


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 21  KNDNTCKLEINEQLYISSYIAE 86
           K  +T   E ++QL++S YIAE
Sbjct: 808 KEKSTTVQEDSQQLFLSVYIAE 829


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 9   VPDLKNDNTCKLEINEQLYISSYIAESYN 95
           VP LK     K+ I  + YI+ ++A  YN
Sbjct: 208 VPLLKRLTIGKISITLKEYITLHVAHGYN 236


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +3

Query: 36  CKLEINEQLYISSYIAESYNCKIIICENKIS 128
           CK+  +E+  +S   + ++  +II+  N+IS
Sbjct: 504 CKVIFDEEFDLSKLPSSNFLDEIILASNRIS 534


>SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 115

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 94  LYDSAIYEDI*SCSLISSLHVLSFLRSGTY 5
           LYD + Y  I  CS++  L+    +R  T+
Sbjct: 71  LYDKSKYIKIIICSVLLKLNTTVIIRRNTH 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 576,546
Number of Sequences: 5004
Number of extensions: 7888
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 2,362,478
effective HSP length: 28
effective length of database: 2,222,366
effective search space used: 42224954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)