Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23f23
         (144 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47075-5|CAA87378.1|  402|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z70271-4|CAA94235.1| 1026|Caenorhabditis elegans Hypothetical pr...    25   5.5  
U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,...    25   7.3  
AF098501-7|AAC67402.1|  199|Caenorhabditis elegans Hypothetical ...    25   9.7  

>Z47075-5|CAA87378.1|  402|Caenorhabditis elegans Hypothetical
           protein E02H1.3 protein.
          Length = 402

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +3

Query: 30  NTCKLEINEQLYISSYIAESYNCKI 104
           N C++++NE+  + SY+ + Y  K+
Sbjct: 196 NFCQIDMNEKRLLQSYVRKVYEVKV 220


>Z70271-4|CAA94235.1| 1026|Caenorhabditis elegans Hypothetical
           protein W08D2.7 protein.
          Length = 1026

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 21  KNDNTCKLEINEQLYISSY 77
           K  N CK+E+ E  Y+SS+
Sbjct: 928 KVSNECKMEVMEDKYVSSF 946


>U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,
            class iii (c) protein1 protein.
          Length = 1400

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 15   DLKNDNTCKLEINEQLYISSYIAESYNCKIIIC 113
            DLK   +CK+  N + Y +S +A S   K  +C
Sbjct: 993  DLKTKESCKICKNLEAYKTSLLANSCLTKTQLC 1025


>AF098501-7|AAC67402.1|  199|Caenorhabditis elegans Hypothetical
           protein H28G03.3 protein.
          Length = 199

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 10  FQILRMIIHVN*KSTNNSIYLHISLNHTIVKL*F 111
           FQI+  + H+  +S N S     S NH I+ + F
Sbjct: 166 FQIIMFLQHIFHESNNMSQKFKFSQNHLIITIFF 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,041,801
Number of Sequences: 27780
Number of extensions: 42239
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 12,740,198
effective HSP length: 28
effective length of database: 11,962,358
effective search space used: 227284802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)