Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23f23
(144 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase pro... 24 0.19
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 19 4.1
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 19 4.1
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 19 4.1
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 19 4.1
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 19 4.1
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 19 4.1
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 19 4.1
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 19 4.1
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 19 5.4
DQ257631-1|ABB82366.1| 424|Apis mellifera yellow e3-like protei... 19 5.4
AB072429-1|BAB83990.1| 388|Apis mellifera IP3phosphatase protein. 19 5.4
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 18 9.4
AB208108-1|BAE72140.1| 92|Apis mellifera Broad complex zinc fi... 18 9.4
>AB253415-1|BAE86926.1| 588|Apis mellifera alpha-glucosidase
protein.
Length = 588
Score = 23.8 bits (49), Expect = 0.19
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 55 NNSIYLHISLNHTIVK 102
N ++ LH SLNHT+ K
Sbjct: 251 NLNLSLHASLNHTLTK 266
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 19.4 bits (38), Expect = 4.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 3 LYVPDLKNDNTCKLEI 50
LYVP +TCK++I
Sbjct: 100 LYVPPGIFKSTCKIDI 115
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 19.4 bits (38), Expect = 4.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 3 LYVPDLKNDNTCKLEI 50
LYVP +TCK++I
Sbjct: 100 LYVPPGIFKSTCKIDI 115
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 19.4 bits (38), Expect = 4.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 3 LYVPDLKNDNTCKLEI 50
LYVP +TCK++I
Sbjct: 100 LYVPPGIFGSTCKIDI 115
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 19.4 bits (38), Expect = 4.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 3 LYVPDLKNDNTCKLEI 50
LYVP +TCK++I
Sbjct: 100 LYVPPGIFKSTCKMDI 115
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 19.4 bits (38), Expect = 4.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 3 LYVPDLKNDNTCKLEI 50
LYVP +TCK++I
Sbjct: 100 LYVPPGIFKSTCKIDI 115
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 19.4 bits (38), Expect = 4.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 3 LYVPDLKNDNTCKLEI 50
LYVP +TCK++I
Sbjct: 168 LYVPPGIFKSTCKIDI 183
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 19.4 bits (38), Expect = 4.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 3 LYVPDLKNDNTCKLEI 50
LYVP +TCK++I
Sbjct: 168 LYVPPGIFKSTCKIDI 183
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 19.4 bits (38), Expect = 4.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 3 LYVPDLKNDNTCKLEI 50
LYVP +TCK++I
Sbjct: 137 LYVPPGIFKSTCKIDI 152
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 19.0 bits (37), Expect = 5.4
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +3
Query: 3 LYVPDLKNDNTCKLEI 50
LYVP +TCK+++
Sbjct: 100 LYVPPGIFKSTCKMDV 115
>DQ257631-1|ABB82366.1| 424|Apis mellifera yellow e3-like protein
protein.
Length = 424
Score = 19.0 bits (37), Expect = 5.4
Identities = 6/9 (66%), Positives = 7/9 (77%)
Frame = -1
Query: 132 DKIFYFHKL 106
D+I YFH L
Sbjct: 260 DRILYFHSL 268
>AB072429-1|BAB83990.1| 388|Apis mellifera IP3phosphatase protein.
Length = 388
Score = 19.0 bits (37), Expect = 5.4
Identities = 5/14 (35%), Positives = 10/14 (71%)
Frame = -2
Query: 140 FFRIRYFIFTNYNF 99
+ + YF+F ++NF
Sbjct: 218 YSNVPYFLFGDFNF 231
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 18.2 bits (35), Expect = 9.4
Identities = 5/7 (71%), Positives = 7/7 (100%)
Frame = +3
Query: 6 YVPDLKN 26
Y+PDL+N
Sbjct: 9 YIPDLRN 15
>AB208108-1|BAE72140.1| 92|Apis mellifera Broad complex zinc
finger domain-Z3 isoform protein.
Length = 92
Score = 18.2 bits (35), Expect = 9.4
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +1
Query: 52 TNNSIYLHISLNH 90
T NS+ H SL H
Sbjct: 47 TKNSLTTHKSLQH 59
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,745
Number of Sequences: 438
Number of extensions: 718
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 28
effective length of database: 134,079
effective search space used: 2547501
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
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