Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23f18
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce...   137   2e-33
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar...    50   3e-07
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar...    33   0.029
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    29   0.63 
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    28   1.1  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     28   1.1  
SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|...    27   1.9  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    27   3.4  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    26   4.4  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   7.8  

>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 262

 Score =  137 bits (331), Expect = 2e-33
 Identities = 63/153 (41%), Positives = 98/153 (64%), Gaps = 2/153 (1%)
 Frame = +3

Query: 234 SASPITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADF 413
           +  PI T ++V+ +KF  G +IA D L SYGSLARF D  R+ KV D  ++G GGD +D+
Sbjct: 36  TVQPIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDY 95

Query: 414 QYLKDIIQQKIIDESCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGI--QDG 587
           Q ++ ++++  I E   GDG  L+P  +H +L++VLY +R+K+DP WN  +VAG+  ++ 
Sbjct: 96  QQIQRLLEKLEIKEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVDGENK 155

Query: 588 EPFLGAVDKLGTAYEDAVISNGLGAYMATPLLR 686
           EP++   D  GT Y    I+ G   ++A P+LR
Sbjct: 156 EPYVAFADLRGTTYSAPAIATGFAMHLALPMLR 188


>SPAC22F8.06 |pam1||20S proteasome component beta
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 1/142 (0%)
 Frame = +3

Query: 261 TVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLKDIIQQ 440
           T + +  D   ++AGDT    G     R  PRV +V D +++G  G  AD   L   IQQ
Sbjct: 15  TTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVKRIQQ 74

Query: 441 KIIDESCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGI-QDGEPFLGAVDKL 617
           + ID        ++  +S  C +  +LY KR    P +    VAGI ++G+  + + D +
Sbjct: 75  R-IDLYHDNHERKMSAQSCACMVRTLLYGKR--FFPYYVYTTVAGIDKEGKGEIYSFDPV 131

Query: 618 GTAYEDAVISNGLGAYMATPLL 683
           G+   +   + G  A   TP L
Sbjct: 132 GSYEREWCRAGGSAANFITPFL 153


>SPAC23D3.07 |pup1||20S proteasome component beta
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 33.5 bits (73), Expect = 0.029
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +3

Query: 249 TTTTTVIGVKFDKGCVIAG-DTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLK 425
           +T TT++GV   K C++ G DT  + G +   ++C ++  ++  I     G  AD +++ 
Sbjct: 33  STGTTIVGV-IAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVT 91

Query: 426 DIIQQKI 446
            +I   I
Sbjct: 92  SMISSNI 98


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +1

Query: 133 CGKTDRRLEHFIIFLEMLPQLLHPGTVYRILQLTQRAPSRPPQRSLELSLTRD 291
           CG+T   L+H ++  E   Q LHP  V    Q  Q+    PPQ+  +L +  D
Sbjct: 49  CGETG--LKHSLVHFE---QTLHPIVVTIARQPKQKINDEPPQKITKLEIRED 96


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 123 PTPLWQNGPSPGAFYNFPGNASTIAPSRHGVQDFTA-HSASPITTT 257
           P+PL    P+P  F N P  AS   P+       TA  SASP+ +T
Sbjct: 364 PSPLQNTNPAPSTFPN-PSVASPAFPNSSTSNPSTAPASASPLAST 408


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 162 FYNFPGNASTIAPSRHGVQDFTAHSASPITTTTTVI 269
           +YN  G +S +  + HG+ DF +H    +  T T I
Sbjct: 254 YYNNDGASSWVFTADHGMSDFGSHGDGNLDNTRTPI 289


>SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +3

Query: 408 DFQYLKDIIQQKIIDESCVGDGLQ--LKPRSLHCWLTRVLYNKRSKM 542
           D  +LKD+ QQKI  ++ +   +Q  +KP    C + R LY+K  ++
Sbjct: 31  DADFLKDLSQQKIDIQAALARTVQGAIKPMITQCCI-RQLYSKSDEL 76


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 641 HSIFICCSQFINSSEKGFTILNTGDHVAVPEGIH 540
           HSIF CC + ++SS     I+N+  +V VP  I+
Sbjct: 309 HSIFFCCLRCLSSSR----IVNSETNVMVPYMIY 338


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 291  CVIAGDTLGSYGSLARFRDCPRVMKVNDLILL 386
            C  AG +LG Y +L+   D   +  + DL+ L
Sbjct: 1822 CAFAGHSLGEYSALSAMGDVLSIEALVDLVFL 1853


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 675 ESPCKLLARSRSQHLHMLFPIYQQ 604
           E+  KLLA+S ++H+  LF  YQ+
Sbjct: 585 ENVAKLLAQSTNKHVATLFSDYQE 608


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,789,855
Number of Sequences: 5004
Number of extensions: 56597
Number of successful extensions: 163
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)