Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23f18
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0728 - 19771975-19772093,19772131-19772224,19772322-197725... 128 3e-30
02_05_0884 - 32483735-32483866,32484417-32484491,32484707-324847... 38 0.006
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 36 0.023
05_01_0588 + 5278013-5278153,5278641-5278782,5278923-5279019,527... 36 0.030
05_07_0290 + 29016410-29018920 30 1.5
03_02_0750 + 10909130-10909616,10912257-10912916,10913139-109135... 30 1.5
06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,831... 29 2.6
06_01_0837 - 6355315-6355342,6356185-6356361,6356579-6356662,635... 29 2.6
10_08_0898 + 21424379-21424792,21424974-21425723 29 4.6
01_02_0074 + 10869546-10871373,10871449-10872077 29 4.6
12_02_0981 - 25027336-25027596,25028017-25028361,25028681-250288... 28 6.0
03_01_0403 - 3133568-3134440,3135131-3135494,3136341-3136408,313... 28 6.0
>09_04_0728 -
19771975-19772093,19772131-19772224,19772322-19772507,
19772596-19772767,19772854-19772983,19773060-19773136,
19774109-19774194,19774508-19774585,19775916-19776045,
19776379-19776423,19776508-19776618,19776801-19777057,
19777153-19777302,19777899-19778008,19778426-19778546
Length = 621
Score = 128 bits (310), Expect = 3e-30
Identities = 59/158 (37%), Positives = 96/158 (60%), Gaps = 4/158 (2%)
Frame = +3
Query: 225 TAHSASPITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDY 404
T + P T +++I +K+ G ++A DT SYGS R++ R+ V L+G G++
Sbjct: 359 TQRTQYPYVTGSSIIALKYKDGVIMASDTGASYGSTLRYKSVERIKAVGKHSLIGASGEF 418
Query: 405 ADFQYLKDIIQQKIIDESCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGIQD 584
+DFQ + + + + + DG L P+ +H +LTRV+YN+R+K DPLWNS V+ G++
Sbjct: 419 SDFQEILRYLDELTLSDHMWDDGNSLGPKEVHSYLTRVMYNRRNKFDPLWNSLVIGGVKK 478
Query: 585 G----EPFLGAVDKLGTAYEDAVISNGLGAYMATPLLR 686
G E +LG V+ +GT +E+ I+ G G +MA P+LR
Sbjct: 479 GPKGEEKYLGMVNMIGTHFEENHIATGFGNHMAIPILR 516
>02_05_0884 -
32483735-32483866,32484417-32484491,32484707-32484780,
32485180-32485291,32485476-32485548,32485674-32485729,
32486046-32486122,32486799-32486940
Length = 246
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +3
Query: 258 TTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLKDIIQ 437
TT++GV +D G V+A D+ S G R ++ ++ D + + G AD Q + D ++
Sbjct: 26 TTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYICRSGSAADTQVISDYVR 85
>06_01_0285 -
2090427-2090558,2091045-2091119,2091334-2091407,
2091792-2091903,2092036-2092108,2092291-2092346,
2092679-2092755,2093384-2093525
Length = 246
Score = 36.3 bits (80), Expect = 0.023
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +3
Query: 258 TTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLKDIIQ 437
TT++GV +D G V+A D+ S G R ++ ++ D + + G AD Q + + ++
Sbjct: 26 TTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADTQVISEYVR 85
>05_01_0588 +
5278013-5278153,5278641-5278782,5278923-5279019,
5279130-5279199,5279284-5279388,5279531-5279629,
5280062-5280152,5280238-5280311
Length = 272
Score = 35.9 bits (79), Expect = 0.030
Identities = 16/67 (23%), Positives = 34/67 (50%)
Frame = +3
Query: 246 ITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLK 425
+ T TT++G+ F G V+ DT + G + ++C ++ + I G AD + +
Sbjct: 35 LKTGTTIVGLVFQDGVVLGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVT 94
Query: 426 DIIQQKI 446
D++ ++
Sbjct: 95 DMVSSQL 101
>05_07_0290 + 29016410-29018920
Length = 836
Score = 30.3 bits (65), Expect = 1.5
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Frame = +3
Query: 351 PRVMKVNDLILLGC-GGDYADFQYL-----KDIIQQKIIDES-----CVGDGLQLKPRSL 497
P V+ LI C G+Y D Y KD +Q ++ S C G LQ K + L
Sbjct: 426 PNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKEL 485
Query: 498 HCWLTRVLYN 527
HC+ R Y+
Sbjct: 486 HCFALRRAYD 495
>03_02_0750 +
10909130-10909616,10912257-10912916,10913139-10913544,
10914376-10914757,10914918-10915679,10916106-10916165,
10916695-10917105
Length = 1055
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -2
Query: 600 RERVHHPEY-RRPRSCSRGDPSYSSCCRGHESTSSAENG 487
R ++HP Y RRPRSCS G CCR + G
Sbjct: 208 RALLNHPNYARRPRSCS-GCVMCGGCCRRRGGAGAGGGG 245
>06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,
8313443-8313523,8313706-8313779,8313865-8313919,
8314031-8314079,8314222-8314359,8314455-8314536,
8315131-8315209,8315357-8315400,8315479-8315673,
8316110-8316185,8317427-8317507,8317623-8317703,
8318128-8318204,8318402-8318499,8318672-8318809,
8319397-8319478,8319564-8319642,8319885-8319931,
8320014-8320228,8320330-8320450,8320529-8320648,
8320731-8320849,8320964-8321036,8321112-8321231,
8321538-8321606,8321756-8321926,8322004-8322051,
8322192-8322333,8323244-8323341,8323684-8323828,
8323928-8324013,8324112-8324222,8324456-8324530,
8324836-8324901,8325036-8325224,8325315-8325425,
8326616-8326696,8327192-8327371
Length = 1385
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = +3
Query: 105 MGDTMNPTPLWQNGPS---PGAFY-NFPGNASTIAPSRHGVQDFTAHSAS 242
MG + PLWQ GP PG Y FPGN + VQ++ S S
Sbjct: 1059 MGQALAGVPLWQLGPESRHPGVPYIVFPGNVGDNSALAKVVQNWACPSRS 1108
>06_01_0837 -
6355315-6355342,6356185-6356361,6356579-6356662,
6356989-6357542,6358086-6358322
Length = 359
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +3
Query: 354 RVMKVNDLILLGCGGDYADFQYLKDIIQQKIIDES 458
RVM V+DL+LLG YAD ++ ++ + K+ +S
Sbjct: 48 RVMMVSDLMLLGSDATYAD-RFFRNHVMSKLFAKS 81
>10_08_0898 + 21424379-21424792,21424974-21425723
Length = 387
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +3
Query: 99 AFMGDTMNPTPLWQNGPSPGAFYNFPGNASTIAPSRHG 212
A MGD M L +PGA FP +A+ A HG
Sbjct: 62 AAMGDAMRVDDLLDLSNTPGAHDFFPASAAAAAAGDHG 99
>01_02_0074 + 10869546-10871373,10871449-10872077
Length = 818
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +3
Query: 153 PGAFYNFPGNASTIAPSRHGVQ--DFTAHSASPITTTTTVIG 272
PG Y F G A + P HG+ +FT SA+ T +G
Sbjct: 642 PGRTYKFYGGADVLYPFGHGLSYTNFTYASATAAAPVTVKVG 683
>12_02_0981 -
25027336-25027596,25028017-25028361,25028681-25028827,
25028906-25029970
Length = 605
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = +3
Query: 402 YADFQYLKDIIQQKIIDESCVGD----GLQLKPRSLHCWLTRVLY 524
+AD++ L D +++D V D G PR LH W R LY
Sbjct: 42 HADWRGLPDAAVSRVLDRLPVVDLFRLGYLFSPRWLHIWRARPLY 86
>03_01_0403 -
3133568-3134440,3135131-3135494,3136341-3136408,
3137184-3137857,3138093-3138105
Length = 663
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 366 VNDLILLGCGGDYADFQYLKDIIQQKIIDESCVGDG 473
V D +L CG Y +Q + ++ +D SC G+G
Sbjct: 490 VRDHVLFLCGLGYTRYQIRQMVLPSPSLDTSCGGEG 525
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,143,539
Number of Sequences: 37544
Number of extensions: 419371
Number of successful extensions: 1344
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1343
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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