Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23f18
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81079-4|CAB03081.1|  236|Caenorhabditis elegans Hypothetical pr...   118   4e-27
L14745-10|AAK71356.1|  258|Caenorhabditis elegans Proteasome bet...    32   0.33 
AF303265-1|AAG50223.1|  258|Caenorhabditis elegans proteasome co...    32   0.33 
Z48544-9|CAA88436.2|  250|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z36719-1|CAA85311.2|  576|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U61944-3|AAB03119.1|  818|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF067222-2|AAC17018.2|  458|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    28   7.2  
AL132841-2|CAB60332.1|  469|Caenorhabditis elegans Hypothetical ...    28   7.2  
Z73912-8|CAA98148.1| 1016|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z72517-7|CAA96698.1| 1016|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z81079-4|CAB03081.1|  236|Caenorhabditis elegans Hypothetical
           protein F39H11.5 protein.
          Length = 236

 Score =  118 bits (284), Expect = 4e-27
 Identities = 58/158 (36%), Positives = 100/158 (63%), Gaps = 8/158 (5%)
 Frame = +3

Query: 219 DFTAHSASPITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGG 398
           D    + +P  T T+VI +++  G V+  D + SYG +AR+++  R  KVND +L+  GG
Sbjct: 5   DEVQRTLNPTCTGTSVIALQYKTGVVVLTDRVVSYGKMARYKNVSRQYKVNDNVLIAFGG 64

Query: 399 DYADFQYLKDIIQQKIIDESCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGI 578
           D+ADF +L+++I+++++          + P++LH +LT +LY KR KM+P+WN+ VVAG+
Sbjct: 65  DHADFHWLQNVIERQVLLWKRFDQ--DIGPKALHGYLTSLLYAKRCKMNPVWNTLVVAGV 122

Query: 579 QDGE--------PFLGAVDKLGTAYEDAVISNGLGAYM 668
           ++ E        PF+G + + G AY+   I+ GLGA++
Sbjct: 123 EEEEKNNKETSTPFIGVITQKGCAYQVKHIATGLGAFL 160


>L14745-10|AAK71356.1|  258|Caenorhabditis elegans Proteasome beta
           subunit protein 6 protein.
          Length = 258

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 34/146 (23%), Positives = 62/146 (42%), Gaps = 2/146 (1%)
 Frame = +3

Query: 252 TTTTVIGVKFDKGCVIAGDTLGSYGSLARF-RDCPRVMKVNDLILLGCGGDYADFQYLKD 428
           +T  + G  F    ++A DT  +   +    RD  ++  +ND I+L   G Y D   LK 
Sbjct: 53  STCAISGENF---AIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKK 109

Query: 429 IIQQKIIDESCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGIQD-GEPFLGA 605
           ++Q + + +        +        L+R LY +R    P +   ++AGI + G+  + +
Sbjct: 110 VLQSR-LHKYRFDYRSDMSVDLCAELLSRNLYYRR--FFPYYTGAILAGIDEHGKGAVFS 166

Query: 606 VDKLGTAYEDAVISNGLGAYMATPLL 683
            D +G        ++G    M  P L
Sbjct: 167 YDPIGCIERLGYSASGAAEPMIIPFL 192


>AF303265-1|AAG50223.1|  258|Caenorhabditis elegans proteasome
           component C5 protein.
          Length = 258

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 34/146 (23%), Positives = 62/146 (42%), Gaps = 2/146 (1%)
 Frame = +3

Query: 252 TTTTVIGVKFDKGCVIAGDTLGSYGSLARF-RDCPRVMKVNDLILLGCGGDYADFQYLKD 428
           +T  + G  F    ++A DT  +   +    RD  ++  +ND I+L   G Y D   LK 
Sbjct: 53  STCAISGENF---AIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKK 109

Query: 429 IIQQKIIDESCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGIQD-GEPFLGA 605
           ++Q + + +        +        L+R LY +R    P +   ++AGI + G+  + +
Sbjct: 110 VLQSR-LHKYRFDYRSDMSVDLCAELLSRNLYYRR--FFPYYTGAILAGIDEHGKGAVFS 166

Query: 606 VDKLGTAYEDAVISNGLGAYMATPLL 683
            D +G        ++G    M  P L
Sbjct: 167 YDPIGCIERLGYSASGAAEPMIIPFL 192


>Z48544-9|CAA88436.2|  250|Caenorhabditis elegans Hypothetical
           protein ZK945.2 protein.
          Length = 250

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 25/82 (30%), Positives = 36/82 (43%)
 Frame = +3

Query: 183 ASTIAPSRHGVQDFTAHSASPITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVM 362
           AST +P     Q   A  A  +    T+I ++   G V+  D L S   L      PR+ 
Sbjct: 12  ASTFSPDGRIFQVEYAQKA--VDNAGTMIAIRGKNGVVVVADKLIS-SKLYTDNANPRMF 68

Query: 363 KVNDLILLGCGGDYADFQYLKD 428
            VND + +   G+Y D   LK+
Sbjct: 69  NVNDNVGVAVAGNYPDGFALKN 90


>Z36719-1|CAA85311.2|  576|Caenorhabditis elegans Hypothetical
           protein C06C3.3 protein.
          Length = 576

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 142 TDRRLEHFIIFLEMLPQLLHPGTVYRILQLTQRAP 246
           T ++ +H+I+FL+ L  LL   T  R L  TQ  P
Sbjct: 37  TRKQFKHWIVFLDALTDLLRTATAVRRLFTTQGIP 71


>U61944-3|AAB03119.1|  818|Caenorhabditis elegans Hypothetical
           protein T12E12.3 protein.
          Length = 818

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 511 LVSSTTRGVRWIPSGTATWSPVFRMVNPFSELLINWEQHMKML 639
           LV +   GV+ +P G A W+   R V   S+   NW  H + +
Sbjct: 376 LVEADKEGVQLMPKGIAFWNDFVR-VTRSSKSATNWSSHFRKI 417


>AF067222-2|AAC17018.2|  458|Caenorhabditis elegans Hypothetical
           protein H11E01.2 protein.
          Length = 458

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 593 GFTILNTGDHVAVPEGIHLT 534
           GFT+ +TG  VA+P  +HLT
Sbjct: 272 GFTVNHTGYFVAIPRALHLT 291


>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical
           protein T23F1.5 protein.
          Length = 1262

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 108 GDTMNPTPLWQNGPSPGAFYNFPGNASTIAPSRHGVQDFTAH 233
           G+   PTP  +       F+  P +A    P  H  +DFT+H
Sbjct: 438 GERSTPTPQEEEEEMMRNFFPRPVSAQAYQPPGHQPEDFTSH 479


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/64 (23%), Positives = 25/64 (39%)
 Frame = -2

Query: 642 SQHLHMLFPIYQQLRERVHHPEYRRPRSCSRGDPSYSSCCRGHESTSSAENGA*AGDHLQ 463
           + H H   P + ++    HH + +   S S    S SS      S+SS+ +     +   
Sbjct: 82  THHAHGAHPGHHEVHHHHHHVKAQDSSSSSSSSSSSSSSSSSSSSSSSSSSSESEDEKHH 141

Query: 462 HSSH 451
           H  H
Sbjct: 142 HKKH 145


>AL132841-2|CAB60332.1|  469|Caenorhabditis elegans Hypothetical
           protein Y15E3A.4 protein.
          Length = 469

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 593 GFTILNTGDHVAVPEGIHLTPLVVEDTSQPAVQ 495
           GF + +TG  VAVP  +HL   ++   +   +Q
Sbjct: 283 GFAVNHTGYFVAVPRALHLAFKIISGVASDRIQ 315


>Z73912-8|CAA98148.1| 1016|Caenorhabditis elegans Hypothetical
           protein ZK524.4 protein.
          Length = 1016

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 520 RTRVNQQCRERGLSWRPSPTQL 455
           R+ +N +CR R  SWR  P  +
Sbjct: 379 RSNINSRCRSRSNSWRARPCSI 400


>Z72517-7|CAA96698.1| 1016|Caenorhabditis elegans Hypothetical
           protein ZK524.4 protein.
          Length = 1016

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 520 RTRVNQQCRERGLSWRPSPTQL 455
           R+ +N +CR R  SWR  P  +
Sbjct: 379 RSNINSRCRSRSNSWRARPCSI 400


>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
            protein Y53C10A.10 protein.
          Length = 1582

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 144  GPSPGAFYNFPGNASTIAPSRHG 212
            GPSPG   N P N S + PS  G
Sbjct: 1396 GPSPGPSPNEPSNPSILGPSTGG 1418


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,718,366
Number of Sequences: 27780
Number of extensions: 338628
Number of successful extensions: 1101
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)