Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23f14
         (752 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0281 + 2059397-2059721,2059807-2060675,2086761-2086910           30   2.3  
07_03_1289 + 25531531-25531995                                         30   2.3  
02_05_0433 - 28939817-28940146                                         30   2.3  
10_06_0004 - 9407954-9408007,9408219-9408386,9408441-9408542,940...    29   3.0  
03_02_0953 + 12684695-12684818,12684910-12685517                       29   5.2  
06_02_0352 + 15083174-15083433,15083973-15084108                       28   9.2  
04_01_0206 + 2507827-2508705,2508844-2509902                           28   9.2  
03_06_0642 + 35239658-35240083,35240167-35240238,35240305-352409...    28   9.2  

>12_01_0281 + 2059397-2059721,2059807-2060675,2086761-2086910
          Length = 447

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/78 (21%), Positives = 36/78 (46%)
 Frame = +1

Query: 403 TVDIMRSSFARCFNSPIMKYAKIVLLQNVASQRDKRTTLEELLIERGEKIQMLQPQQYIN 582
           ++D +  + AR F SP+ +     ++  +A  ++K+T +E  + +    +    P  +  
Sbjct: 333 SIDQVAKTAARVFGSPVRQ----PVVSPLAPGKEKKTAVETSVSDYSLAVPHFAPGDFET 388

Query: 583 SGTEIPFCDDSEFLNRLL 636
               IPF +     NRL+
Sbjct: 389 RAELIPFVEGKSIFNRLI 406


>07_03_1289 + 25531531-25531995
          Length = 154

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/31 (48%), Positives = 15/31 (48%)
 Frame = -2

Query: 385 SKASPTEIARRPTACPFEPASFAVCTCSRQT 293
           SK  PT  A RPTA    PA   V  C  QT
Sbjct: 99  SKLQPTPAAARPTATGAPPAMVVVSACQFQT 129


>02_05_0433 - 28939817-28940146
          Length = 109

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/53 (28%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
 Frame = -3

Query: 417 HNIDGRQVDCGRRHLQQRSHGVQQRVRLNLRHLRSARVVVKRGF-EQFEQRMI 262
           H +D R+ +   RH Q+R+  ++Q+ R +++ L   R+++++ + E+ EQR +
Sbjct: 32  HRLDVRRQEALERHAQERA-AIEQQWRQSMQALERERLMLEQAWMEREEQRRV 83


>10_06_0004 -
           9407954-9408007,9408219-9408386,9408441-9408542,
           9408710-9408934,9409889-9410047,9411768-9411900,
           9412827-9413758,9413842-9413987,9415863-9416082
          Length = 712

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +3

Query: 255 GKVSFVVQ--TARNHV*RLHVQTANDAGSNGHAVGRRAISVGDAFDH 389
           G VSF V   T  NH  ++ V  AN+    G+  G R    G+A DH
Sbjct: 188 GNVSFTVSLTTPLNH--QIRVTNANEIIMEGYCPGERPTEYGNASDH 232


>03_02_0953 + 12684695-12684818,12684910-12685517
          Length = 243

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -3

Query: 108 RRDGVGSRKQIYYGTRRRMGGRWRCD--DDARVSR 10
           RR   G R+ +Y G RRR  G+W  +  D A+ +R
Sbjct: 56  RRQRRGERRTLYRGIRRRPWGKWAAEIRDPAKGAR 90


>06_02_0352 + 15083174-15083433,15083973-15084108
          Length = 131

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +2

Query: 275 SNCSKPRLTTTRADRK*RRFKRTRCWTPCDLCWRCLR 385
           + C    +  +  DR+   F  +R  T C  CW+C+R
Sbjct: 51  ATCGGEAVVPSPGDRRTVVFATSRATTFCRPCWKCMR 87


>04_01_0206 + 2507827-2508705,2508844-2509902
          Length = 645

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 378 HLQQRSHGVQQRVRLNLRHLRSARVVVKRGFEQF 277
           +LQ R H +++   L+L++  S   + KRG   F
Sbjct: 190 YLQDRDHRIREEEELSLQYAHSLHHICKRGIVNF 223


>03_06_0642 +
           35239658-35240083,35240167-35240238,35240305-35240919,
           35241253-35241435,35241604-35241663,35241733-35241936,
           35242497-35242745,35243609-35243707,35243760-35243858,
           35244463-35244480,35244668-35244862,35244981-35245073,
           35245265-35245531,35245884-35246102
          Length = 932

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 478 LQNVASQRDKRTTLEELLIERGEKIQMLQPQQYINSGTEIPF 603
           L  VA  R     LEEL  E+G ++Q+     Y+    E+ F
Sbjct: 840 LAMVAEDRQINDVLEELFAEQGNEMQIRPADLYLREDEELNF 881


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,078,709
Number of Sequences: 37544
Number of extensions: 387960
Number of successful extensions: 1324
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1324
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)