Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23f13
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     24   1.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.9  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   2.4  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   3.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   3.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   4.3  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 612 TTKLQLSKNVICAHCKGVGGK 674
           +T L+L    I  HC+ VGGK
Sbjct: 35  STILRLDPKFIALHCQEVGGK 55


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 157 HLFLVVI*LGFQNSFNPLHHGKKWLITNYTR 249
           HL + V+    Q+ F P+H+G   + +NY R
Sbjct: 913 HLTVAVVQYKTQDGFGPIHYG---VCSNYLR 940


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +3

Query: 210 TSREKMADNKLYEILGVSKNASESEIKRNYHKLAKEFH 323
           T RE+  + K+   L  + N + +  K NY+   K+ +
Sbjct: 304 TERERSKERKIISSLSNNYNYNNNNYKYNYNNYNKKLY 341


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = -1

Query: 522 YSHPFQRGYQRNYQKFHQPETLLLGRLPV 436
           Y++ +   Y  NY+K ++   + + ++PV
Sbjct: 101 YNNNYNNNYNNNYKKLYKNYIINIEQIPV 129


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = -1

Query: 522 YSHPFQRGYQRNYQKFHQPETLLLGRLPV 436
           Y++ +   Y  NY+K ++   + + ++PV
Sbjct: 101 YNNNYNNNYNNNYKKLYKNYIINIEQIPV 129


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/42 (28%), Positives = 16/42 (38%)
 Frame = +3

Query: 204 SSTSREKMADNKLYEILGVSKNASESEIKRNYHKLAKEFHPD 329
           SSTS E+  + K    L   K       ++     A  FH D
Sbjct: 756 SSTSSEESREEKATTSLEAEKREKSEHCEKGKEYYAASFHTD 797


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,030
Number of Sequences: 438
Number of extensions: 5151
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)