Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23f08
(723 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 30 0.29
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 29 0.89
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 28 1.2
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p... 28 1.6
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 27 2.7
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 27 2.7
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 26 4.7
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.7
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual 26 4.7
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 8.3
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 25 8.3
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 30.3 bits (65), Expect = 0.29
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 156 TILPIVKQSETTADMFTG*LTFLFQLINVWLYF 58
TI P K + A T +F+F L ++WLYF
Sbjct: 475 TITPATKSDKGWAGFLTFAFSFVFLLFSIWLYF 507
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 28.7 bits (61), Expect = 0.89
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 244 IVQRQPETARRQHREPVPRQRRSNQEGSIHGTRAPPI 354
+ Q QP + + P P R QE S++GT++ PI
Sbjct: 394 VSQSQPASPNLRFNMPAPLATRFLQEHSLNGTKSAPI 430
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 28.3 bits (60), Expect = 1.2
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 560 YKVDDVIGEKDSQSYNYIKKFVE 628
Y VD V+ + ++Q+Y ++KKF E
Sbjct: 67 YPVDGVVPKHETQAYEFLKKFPE 89
>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 514 DALSGPGHVVNHSSYRHEQPLS 449
D L G++V+H ++RHE P+S
Sbjct: 80 DTLIENGYIVSHHAHRHEPPVS 101
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 27.1 bits (57), Expect = 2.7
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -2
Query: 263 SGCRWTIGISESTFLFEDRKLGPLLRCF 180
SGC W +G+S +LF ++++ + F
Sbjct: 437 SGCDWNVGLSYLNWLFVNKRITEAINFF 464
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 211 SSNKNVDSEMPIVQRQP-ETARRQHREPVPRQRRSNQE 321
+ K + S P Q+QP +T + + +EP+ + + N E
Sbjct: 78 AERKKLHSSFPSTQQQPPKTEKEKEKEPIQAKHKKNVE 115
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 26.2 bits (55), Expect = 4.7
Identities = 20/74 (27%), Positives = 36/74 (48%)
Frame = +2
Query: 209 DPQTKMLILKCQSSSGNPKRHDVNIVNLSLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVR 388
+P T + + C+ SG+ + + L L ++ + VST P SLN R N+ V+
Sbjct: 513 EPVTSVALGDCEVVSGS----EDGKIYLWLFNNAPNESPVSTQSVPISSLNGQRSNSSVQ 568
Query: 389 NSIENKRRLVSALS 430
++ + S+LS
Sbjct: 569 RALSSVPNYSSSLS 582
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -1
Query: 486 SITLAIAMNSLCPSGSRHADNADTNLRLFSIEFLTLVFNLCKFNDWGGSGTVDTSF 319
SI + +++ S+ ADN++TNL F+ + L F+ G G+ D +
Sbjct: 856 SINSGASADAVSSGISKKADNSETNLNYFATLDAFVKSPLMSFDGLGELGSTDQRY 911
>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 723
Score = 26.2 bits (55), Expect = 4.7
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +1
Query: 211 SSNKNVDSEMPIVQRQPETARR 276
S++K D+E+P+V+ + E AR+
Sbjct: 518 SASKTTDTEIPLVKNEDENARK 539
>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +1
Query: 214 SNKNVDSEMPIVQRQPETARRQHREPVPRQRRSNQEGSIHGTRAPPIIELAQIEHK 381
S+ ++D V +++ EP+ +++R NQ+ + RA + ELA E +
Sbjct: 173 SSNDIDDGFQTVTSSRSYGKKKSTEPLTKRQRQNQQKKL---RAKEMQELADEEQR 225
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 25.4 bits (53), Expect = 8.3
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -1
Query: 534 ILLLYTRMLCPAQDTSSITLAIAMNSLCPSGSRHADNADTNL-RLFSIEFLTLVFNLCKF 358
+LLL RM + ++++L ++S C G+ D A + + F + L+FN
Sbjct: 618 LLLLEKRMESEGKAPTALSLVAFVSSYCKQGAEGLDEAKRYMSKNFQPDKRALLFNPRTA 677
Query: 357 ND 352
ND
Sbjct: 678 ND 679
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,123,701
Number of Sequences: 5004
Number of extensions: 67656
Number of successful extensions: 191
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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