Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23f08
(723 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0705 - 31074246-31074296,31074632-31074770,31075636-310757... 37 0.014
11_01_0319 - 2396835-2396951,2397035-2397105,2397219-2397297,239... 35 0.075
01_06_0116 - 26595570-26596607,26596964-26598353,26599386-265999... 35 0.075
05_06_0121 - 25762247-25762876,25762961-25763134,25763899-25764186 31 0.70
06_03_0097 - 16607936-16608712,16610114-16610320,16611220-166113... 30 1.6
05_05_0225 - 23437454-23437793,23438348-23440573,23440771-23441603 30 2.1
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 29 2.8
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 29 3.7
12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880... 28 8.6
08_01_0281 - 2290348-2290637,2290846-2291032 28 8.6
06_03_1368 - 29612463-29612638,29613135-29613222,29613334-296134... 28 8.6
03_06_0096 - 31627332-31627570,31628467-31628743,31628963-316291... 28 8.6
>02_05_0705 -
31074246-31074296,31074632-31074770,31075636-31075716,
31077228-31077401,31077501-31077649
Length = 197
Score = 37.1 bits (82), Expect = 0.014
Identities = 33/177 (18%), Positives = 76/177 (42%), Gaps = 13/177 (7%)
Frame = +2
Query: 137 FTIGSIVATRTCYNENIEGEVLAFDPQTKMLILKCQSSS------------GNPKRHDVN 280
F IG +++ +T E EG++++FD T +L++ S S +R +V
Sbjct: 8 FAIGVLISVKTTLGEEFEGQIVSFDRPTNLLVIHILSKSLPIRSQEGVGRAERGERRNVR 67
Query: 281 IVNLSLVSDVQIKKEVSTVPEPPQS-LNLHRLNTRVRNSIENKRRLVSALSACLDPEGQR 457
++ + + + + + +P L+L ++ R ++ + + PE Q
Sbjct: 68 VLKANYIREFSVVGKADDPLDPAGCVLDLAAIHAREEAALRQAEIEAERIGVGVTPEAQS 127
Query: 458 LFMAIARVIDDVSWAGQSIRVYNNKIHQVMITPPYKVDDVIGEKDSQSYNYIKKFVE 628
+F A+++ + Q + + +V + PY ++V G S + +KK ++
Sbjct: 128 IFDALSKTYILLRLPVQWDKTDIVVMKEVRVCNPYLPENVSG-GTSAANERVKKVLD 183
>11_01_0319 -
2396835-2396951,2397035-2397105,2397219-2397297,
2397417-2397458,2397670-2397723,2397836-2397868,
2397959-2398039,2398144-2398230,2398313-2398388,
2398633-2398808,2398912-2399034,2399249-2399361,
2399521-2399632,2400054-2400273,2401986-2402314,
2402408-2402713,2403580-2403878,2404079-2404181,
2404266-2404369,2404840-2404906,2404911-2405076,
2405241-2405956
Length = 1157
Score = 34.7 bits (76), Expect = 0.075
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 178 RKHRRRGPSFRSSNKNVDSEMPIVQRQPETARRQHREPVPRQRRSNQE 321
R+HRRR PS S + + D + R E++RR+ R+ R+ R +
Sbjct: 31 RRHRRRSPSSESCSSSGDDDRSRRHRHDESSRRRQRDQSHRRDRGGHD 78
>01_06_0116 -
26595570-26596607,26596964-26598353,26599386-26599923,
26600562-26601453
Length = 1285
Score = 34.7 bits (76), Expect = 0.075
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +1
Query: 154 SRHAHLLQRKHRRRGPSFRSSNKNVDSEMPIVQRQPETARRQHREPVPRQRRSN 315
SRH R HRR G RS ++ ++ R+ A R R+P P +RRS+
Sbjct: 5 SRHRSSSHRSHRRGGSVERSESEGDEAGGGAGAREEAAAARVSRDPEPERRRSS 58
>05_06_0121 - 25762247-25762876,25762961-25763134,25763899-25764186
Length = 363
Score = 31.5 bits (68), Expect = 0.70
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = +1
Query: 169 LLQRKHRRRGPSFRSSNKNVDSEMPIVQRQPETARRQHREPVPRQRRSNQEGSIHGTRAP 348
L++ + R SS K+V+ E +VQ Q + PV +RR + G I+ R+P
Sbjct: 133 LMRLQASSRAIKMASSRKSVEQERIVVQMQGGRVKTLTL-PVVHRRRVSDGGDINFDRSP 191
Query: 349 PIIEL 363
I+E+
Sbjct: 192 RIVEM 196
>06_03_0097 - 16607936-16608712,16610114-16610320,16611220-16611336,
16611409-16611690,16611811-16612294,16612791-16612929,
16613138-16613243,16613396-16613562,16613632-16613707,
16614173-16614321,16614813-16614874,16615232-16615335,
16616856-16616950,16617046-16617136,16617785-16617922
Length = 997
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Frame = +1
Query: 88 QKR*STRKHVGRR----FGLLHDRQYSRHAHLLQRKHRRRGPSFRSSNKNVDSEMPIVQR 255
+KR S KH RR + D QY++ H +R HR R P SS+ + R
Sbjct: 921 KKRKSHSKHRTRRSRSPYADSSDSQYTKRKHREKRHHRTRNPDTDSSDHEYEERHKSSSR 980
Query: 256 QPETARRQHR 285
+ R R
Sbjct: 981 RSSDKDRSRR 990
>05_05_0225 - 23437454-23437793,23438348-23440573,23440771-23441603
Length = 1132
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/61 (24%), Positives = 36/61 (59%)
Frame = +2
Query: 236 KCQSSSGNPKRHDVNIVNLSLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKRRL 415
+CQ+ + ++ D+ + +S++S V+++ +PP + LH L + +R +++KR L
Sbjct: 228 ECQAFVRSSQKVDMRRLLISMLSQVRLQ-------QPPDNWKLHSLISSIRTHLQDKRYL 280
Query: 416 V 418
+
Sbjct: 281 I 281
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = +1
Query: 175 QRKHRRRGPSFRSSNKNVDSEMPIVQRQPETARRQHREPVPRQRRSNQEGSIHGT 339
+R+H RR RS + D P +R P ARR+ R P PR R + + T
Sbjct: 214 RREHSRRSGRSRSRSPARDRGSPPRRRSP-PARRE-RSPAPRSRSPRRRSPVKTT 266
>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +1
Query: 154 SRHAHLLQRKHRRRGPSFRSSNKNVDSEMPIVQRQPETARRQHRE 288
++ L RKHRRRG S S + DS+ R+ + R++HR+
Sbjct: 1110 AKEKKLKSRKHRRRGHSSSDSESDSDSDGDRKHRKRKD-RKRHRK 1153
>12_01_0906 +
8799284-8799441,8800865-8801690,8801933-8802055,
8802144-8802210,8802611-8802714,8802798-8802900,
8803103-8803401,8804009-8804263,8805471-8805776,
8805866-8806194,8806829-8806916,8807027-8807164,
8807438-8807458
Length = 938
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +1
Query: 175 QRKHRRRGPSFRSSNKNVDSEMPIVQRQPETARRQHREPVPRQRRSNQE 321
+R+HRRR PS SS D R+ E++RRQ R+ R R +E
Sbjct: 135 RRRHRRRSPSSESS----DGGRSRRHRRDESSRRQ-RDERRRDRGGREE 178
>08_01_0281 - 2290348-2290637,2290846-2291032
Length = 158
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 250 QRQPETARRQHREPVPRQRRSNQEGSIHGTRAPPII 357
QR P AR+ H P+ QRR + + +PPII
Sbjct: 115 QRLP--ARKPHIRPLRHQRRGGKSRGVRRAPSPPII 148
>06_03_1368 -
29612463-29612638,29613135-29613222,29613334-29613474,
29613561-29613595,29613990-29614054,29614286-29614335,
29614417-29614521,29614608-29614688,29614771-29614852,
29614941-29614995,29615111-29616164,29617202-29617289,
29617379-29617485,29617568-29617686,29617784-29617994
Length = 818
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 226 VDSEMPIVQRQPETARRQHREPVPRQRRSNQEGSIHGTRAPPII 357
V E Q Q + Q +EPVP+Q++ S HGT P ++
Sbjct: 682 VHKEFERQQPQRHQSSTQQQEPVPQQQQQTPNQS-HGTGRPGLV 724
>03_06_0096 -
31627332-31627570,31628467-31628743,31628963-31629118,
31629205-31629381,31629543-31629745,31630680-31630995
Length = 455
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 622 RRKTLARSSHACAPTINLTYIETLLYYNYYIYLP 723
RR+ L R++ CAP + T +LL Y Y P
Sbjct: 44 RRRLLRRAARLCAPLLLATLAVSLLLYESYRLSP 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,604,090
Number of Sequences: 37544
Number of extensions: 450971
Number of successful extensions: 1349
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1348
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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