Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23f08
(723 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC044587-1|AAH44587.1| 195|Homo sapiens LSM12 homolog (S. cerev... 142 9e-34
AK055218-1|BAB70877.1| 195|Homo sapiens protein ( Homo sapiens ... 142 1e-33
BC105288-1|AAI05289.1| 131|Homo sapiens LSM12 protein protein. 100 5e-21
AL049712-6|CAI22420.2| 906|Homo sapiens transmembrane channel-l... 36 0.19
AF417580-1|AAL86401.2| 906|Homo sapiens transmembrane channel-l... 36 0.19
BC115376-1|AAI15377.1| 954|Homo sapiens C2orf16 protein protein. 31 3.2
AL834384-1|CAD39047.1| 845|Homo sapiens hypothetical protein pr... 31 3.2
AC074091-7|AAX93198.1| 939|Homo sapiens unknown protein. 31 3.2
D38521-1|BAA07526.1| 1798|Homo sapiens KIAA0077 protein. 31 5.5
BC113668-1|AAI13669.1| 1729|Homo sapiens proteasome (prosome, ma... 31 5.5
BC112169-1|AAI12170.1| 1729|Homo sapiens proteasome (prosome, ma... 31 5.5
BC071768-1|AAH71768.1| 215|Homo sapiens PSME4 protein protein. 31 5.5
BC043602-1|AAH43602.1| 459|Homo sapiens PSME4 protein protein. 31 5.5
AY894755-1|AAX83870.1| 987|Homo sapiens proteasome activator 20... 31 5.5
AY894754-1|AAX83869.1| 1218|Homo sapiens proteasome activator 20... 31 5.5
BC025396-1|AAH25396.1| 538|Homo sapiens spermatogenesis associa... 30 7.3
AK057468-1|BAB71501.1| 522|Homo sapiens protein ( Homo sapiens ... 30 7.3
>BC044587-1|AAH44587.1| 195|Homo sapiens LSM12 homolog (S.
cerevisiae) protein.
Length = 195
Score = 142 bits (345), Expect = 9e-34
Identities = 72/177 (40%), Positives = 113/177 (63%)
Frame = +2
Query: 113 MSAVVSDCFTIGSIVATRTCYNENIEGEVLAFDPQTKMLILKCQSSSGNPKRHDVNIVNL 292
M+A + F++GS V+ RTC + ++GEV+AFD Q+KML LKC SSSG P D+ ++NL
Sbjct: 1 MAAPPGEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINL 60
Query: 293 SLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLFMAI 472
VS+V+I + + P P SLN+ +L ++ R E K A+SA + EGQ+LF I
Sbjct: 61 QYVSEVEIINDRTETPRPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLFQTI 120
Query: 473 ARVIDDVSWAGQSIRVYNNKIHQVMITPPYKVDDVIGEKDSQSYNYIKKFVERHWRD 643
+ I D W ++I V + +V+ITPPY+V++ G K+ + ++++K VE+H+RD
Sbjct: 121 HKTIKDCKWQEKNIVV----MEEVVITPPYQVENCKG-KEGSALSHVRKIVEKHFRD 172
>AK055218-1|BAB70877.1| 195|Homo sapiens protein ( Homo sapiens
cDNA FLJ30656 fis, clone DFNES2000292. ).
Length = 195
Score = 142 bits (344), Expect = 1e-33
Identities = 72/177 (40%), Positives = 113/177 (63%)
Frame = +2
Query: 113 MSAVVSDCFTIGSIVATRTCYNENIEGEVLAFDPQTKMLILKCQSSSGNPKRHDVNIVNL 292
M+A + F++GS V+ RTC + ++GEV+AFD Q+KML LKC SSSG P D+ ++NL
Sbjct: 1 MAAPPGEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINL 60
Query: 293 SLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLFMAI 472
VS+V+I + + P P SLN+ +L ++ R E K A+SA + EGQ+LF I
Sbjct: 61 QYVSEVEIINDRTETPPPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLFQTI 120
Query: 473 ARVIDDVSWAGQSIRVYNNKIHQVMITPPYKVDDVIGEKDSQSYNYIKKFVERHWRD 643
+ I D W ++I V + +V+ITPPY+V++ G K+ + ++++K VE+H+RD
Sbjct: 121 HKTIKDCKWQEKNIVV----MEEVVITPPYQVENCKG-KEGSALSHVRKIVEKHFRD 172
>BC105288-1|AAI05289.1| 131|Homo sapiens LSM12 protein protein.
Length = 131
Score = 100 bits (240), Expect = 5e-21
Identities = 53/129 (41%), Positives = 79/129 (61%), Gaps = 3/129 (2%)
Frame = +2
Query: 113 MSAVVSDCFTIGSIVATRTCYNENIEGEVLAFDPQTKMLIL---KCQSSSGNPKRHDVNI 283
M+A + F++GS V+ RTC + ++GEV+AFD Q+KML L +C SSSG P D+ +
Sbjct: 1 MAAPPGEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALISPECPSSSGKPNHADILL 60
Query: 284 VNLSLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLF 463
+NL VS+V+I + + P P SLN+ +L ++ R E K A+SA + EGQ+LF
Sbjct: 61 INLQYVSEVEIINDRTETPPPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLF 120
Query: 464 MAIARVIDD 490
I + I D
Sbjct: 121 QTIHKTIKD 129
>AL049712-6|CAI22420.2| 906|Homo sapiens transmembrane channel-like
2 protein.
Length = 906
Score = 35.5 bits (78), Expect = 0.19
Identities = 24/77 (31%), Positives = 32/77 (41%)
Frame = +1
Query: 112 HVGRRFGLLHDRQYSRHAHLLQRKHRRRGPSFRSSNKNVDSEMPIVQRQPETARRQHREP 291
H G R G R S+ A + RRG + S P R+ +T RR+HRE
Sbjct: 26 HTGDRLGR---RSSSKRALKAEGTPGRRGAQRSQKERAGGSPSPGSPRRKQTGRRRHREE 82
Query: 292 VPRQRRSNQEGSIHGTR 342
+ Q R E + G R
Sbjct: 83 LGEQERGEAERTCEGRR 99
>AF417580-1|AAL86401.2| 906|Homo sapiens transmembrane channel-like
protein 2 protein.
Length = 906
Score = 35.5 bits (78), Expect = 0.19
Identities = 24/77 (31%), Positives = 32/77 (41%)
Frame = +1
Query: 112 HVGRRFGLLHDRQYSRHAHLLQRKHRRRGPSFRSSNKNVDSEMPIVQRQPETARRQHREP 291
H G R G R S+ A + RRG + S P R+ +T RR+HRE
Sbjct: 26 HTGDRLGR---RSSSKRALKAEGTPGRRGAQRSQKERAGGSPSPGSPRRKQTGRRRHREE 82
Query: 292 VPRQRRSNQEGSIHGTR 342
+ Q R E + G R
Sbjct: 83 LGEQERGEAERTCEGRR 99
>BC115376-1|AAI15377.1| 954|Homo sapiens C2orf16 protein protein.
Length = 954
Score = 31.5 bits (68), Expect = 3.2
Identities = 20/60 (33%), Positives = 25/60 (41%)
Frame = +1
Query: 154 SRHAHLLQRKHRRRGPSFRSSNKNVDSEMPIVQRQPETARRQHREPVPRQRRSNQEGSIH 333
S +H + R R PS RS P +R ++R HR P R RS E S H
Sbjct: 652 SERSHCSPSERRHRSPSQRSHRG------PSERRHHSPSKRSHRSPARRSHRSPSERSHH 705
Score = 30.3 bits (65), Expect = 7.3
Identities = 31/102 (30%), Positives = 41/102 (40%)
Frame = +1
Query: 28 AHRSKTEKLTKI*PYINQLKQKR*STRKHVGRRFGLLHDRQYSRHAHLLQRKHRRRGPSF 207
+HRS +E+ + P ++ + + S R H G RH QR H RGPS
Sbjct: 623 SHRSPSERSHRS-P--SERRHRSPSQRSHRGPSERSHCSPSERRHRSPSQRSH--RGPSE 677
Query: 208 RSSNKNVDSEMPIVQRQPETARRQHREPVPRQRRSNQEGSIH 333
R + P + ARR HR P R S E S H
Sbjct: 678 RRHHS------PSKRSHRSPARRSHRSPSERSHHSPSERSHH 713
>AL834384-1|CAD39047.1| 845|Homo sapiens hypothetical protein
protein.
Length = 845
Score = 31.5 bits (68), Expect = 3.2
Identities = 20/60 (33%), Positives = 25/60 (41%)
Frame = +1
Query: 154 SRHAHLLQRKHRRRGPSFRSSNKNVDSEMPIVQRQPETARRQHREPVPRQRRSNQEGSIH 333
S +H + R R PS RS P +R ++R HR P R RS E S H
Sbjct: 543 SERSHCSPSERRHRSPSQRSHRG------PSERRHHSPSKRSHRSPARRSHRSPSERSHH 596
Score = 30.3 bits (65), Expect = 7.3
Identities = 31/102 (30%), Positives = 41/102 (40%)
Frame = +1
Query: 28 AHRSKTEKLTKI*PYINQLKQKR*STRKHVGRRFGLLHDRQYSRHAHLLQRKHRRRGPSF 207
+HRS +E+ + P ++ + + S R H G RH QR H RGPS
Sbjct: 514 SHRSPSERSHRS-P--SERRHRSPSQRSHRGPSERSHCSPSERRHRSPSQRSH--RGPSE 568
Query: 208 RSSNKNVDSEMPIVQRQPETARRQHREPVPRQRRSNQEGSIH 333
R + P + ARR HR P R S E S H
Sbjct: 569 RRHHS------PSKRSHRSPARRSHRSPSERSHHSPSERSHH 604
>AC074091-7|AAX93198.1| 939|Homo sapiens unknown protein.
Length = 939
Score = 31.5 bits (68), Expect = 3.2
Identities = 20/60 (33%), Positives = 25/60 (41%)
Frame = +1
Query: 154 SRHAHLLQRKHRRRGPSFRSSNKNVDSEMPIVQRQPETARRQHREPVPRQRRSNQEGSIH 333
S +H + R R PS RS P +R ++R HR P R RS E S H
Sbjct: 637 SERSHCSPSERRHRSPSQRSHRG------PSERRHHSPSKRSHRSPARRSHRSPSERSHH 690
Score = 30.3 bits (65), Expect = 7.3
Identities = 30/102 (29%), Positives = 40/102 (39%)
Frame = +1
Query: 28 AHRSKTEKLTKI*PYINQLKQKR*STRKHVGRRFGLLHDRQYSRHAHLLQRKHRRRGPSF 207
+HRS +E+ + ++ + + S R H G RH QR H RGPS
Sbjct: 608 SHRSPSERSHRS---SSERRHRSPSQRSHRGPSERSHCSPSERRHRSPSQRSH--RGPSE 662
Query: 208 RSSNKNVDSEMPIVQRQPETARRQHREPVPRQRRSNQEGSIH 333
R + P + ARR HR P R S E S H
Sbjct: 663 RRHHS------PSKRSHRSPARRSHRSPSERSHHSPSERSHH 698
>D38521-1|BAA07526.1| 1798|Homo sapiens KIAA0077 protein.
Length = 1798
Score = 30.7 bits (66), Expect = 5.5
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 628 KTLARSSHACAPTINLTYIETLLYYNYYIYL 720
K ARSS A LTY++T+++YN +I+L
Sbjct: 1602 KQTARSSSWHARYTVLTYLQTMVFYNLFIFL 1632
>BC113668-1|AAI13669.1| 1729|Homo sapiens proteasome (prosome,
macropain) activator subunit 4 protein.
Length = 1729
Score = 30.7 bits (66), Expect = 5.5
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 628 KTLARSSHACAPTINLTYIETLLYYNYYIYL 720
K ARSS A LTY++T+++YN +I+L
Sbjct: 1533 KQTARSSSWHARYTVLTYLQTMVFYNLFIFL 1563
>BC112169-1|AAI12170.1| 1729|Homo sapiens proteasome (prosome,
macropain) activator subunit 4 protein.
Length = 1729
Score = 30.7 bits (66), Expect = 5.5
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 628 KTLARSSHACAPTINLTYIETLLYYNYYIYL 720
K ARSS A LTY++T+++YN +I+L
Sbjct: 1533 KQTARSSSWHARYTVLTYLQTMVFYNLFIFL 1563
>BC071768-1|AAH71768.1| 215|Homo sapiens PSME4 protein protein.
Length = 215
Score = 30.7 bits (66), Expect = 5.5
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 628 KTLARSSHACAPTINLTYIETLLYYNYYIYL 720
K ARSS A LTY++T+++YN +I+L
Sbjct: 19 KQTARSSSWHARYTVLTYLQTMVFYNLFIFL 49
>BC043602-1|AAH43602.1| 459|Homo sapiens PSME4 protein protein.
Length = 459
Score = 30.7 bits (66), Expect = 5.5
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 628 KTLARSSHACAPTINLTYIETLLYYNYYIYL 720
K ARSS A LTY++T+++YN +I+L
Sbjct: 263 KQTARSSSWHARYTVLTYLQTMVFYNLFIFL 293
>AY894755-1|AAX83870.1| 987|Homo sapiens proteasome activator 200
kDa iii protein.
Length = 987
Score = 30.7 bits (66), Expect = 5.5
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 628 KTLARSSHACAPTINLTYIETLLYYNYYIYL 720
K ARSS A LTY++T+++YN +I+L
Sbjct: 791 KQTARSSSWHARYTVLTYLQTMVFYNLFIFL 821
>AY894754-1|AAX83869.1| 1218|Homo sapiens proteasome activator 200 kDa
ii protein.
Length = 1218
Score = 30.7 bits (66), Expect = 5.5
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 628 KTLARSSHACAPTINLTYIETLLYYNYYIYL 720
K ARSS A LTY++T+++YN +I+L
Sbjct: 1022 KQTARSSSWHARYTVLTYLQTMVFYNLFIFL 1052
>BC025396-1|AAH25396.1| 538|Homo sapiens spermatogenesis associated
18 homolog (rat) protein.
Length = 538
Score = 30.3 bits (65), Expect = 7.3
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +1
Query: 211 SSNKNVDSEMPIVQRQPETARRQHREPVPRQRRSNQ-EGSIHGTRA 345
S K+VDS++P +Q + R +H++P PR R Q + +++ TR+
Sbjct: 90 SLGKSVDSKVPSLQDTFD--RERHKDPSPRDRDMQQLDSNLNSTRS 133
>AK057468-1|BAB71501.1| 522|Homo sapiens protein ( Homo sapiens
cDNA FLJ32906 fis, clone TESTI2005731. ).
Length = 522
Score = 30.3 bits (65), Expect = 7.3
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +1
Query: 211 SSNKNVDSEMPIVQRQPETARRQHREPVPRQRRSNQ-EGSIHGTRA 345
S K+VDS++P +Q + R +H++P PR R Q + +++ TR+
Sbjct: 90 SLGKSVDSKVPSLQDTFD--RERHKDPSPRDRDMQQLDSNLNSTRS 133
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,026,607
Number of Sequences: 237096
Number of extensions: 2521095
Number of successful extensions: 6012
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5991
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8511181328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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