Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23f08
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73428-5|CAA97808.2|  209|Caenorhabditis elegans Hypothetical pr...    45   6e-05
Z34802-8|CAH10787.1|  704|Caenorhabditis elegans Hypothetical pr...    33   0.16 
Z34802-7|CAA84338.2|  828|Caenorhabditis elegans Hypothetical pr...    32   0.36 
AL117195-12|CAB60765.1|  425|Caenorhabditis elegans Hypothetical...    31   0.83 
AC024200-11|AAF36000.1|  271|Caenorhabditis elegans Hypothetical...    31   1.1  
L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell m...    30   1.5  
L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell m...    30   1.5  
L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell m...    30   1.5  
Z97628-2|CAB10726.2|  427|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z81080-5|CAB03088.2|  427|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z81080-2|CAD56584.1|  358|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U13876-16|AAW88394.1|  420|Caenorhabditis elegans Proteasome reg...    29   4.4  
U13876-15|AAA21173.2|  438|Caenorhabditis elegans Proteasome reg...    29   4.4  
AL132860-26|CAB60511.2|  700|Caenorhabditis elegans Hypothetical...    29   4.4  
Z92790-4|CAB07227.2|  227|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical...    28   5.9  
AC006676-4|AAK71380.1|  288|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z73428-5|CAA97808.2|  209|Caenorhabditis elegans Hypothetical
           protein M142.5 protein.
          Length = 209

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 8/163 (4%)
 Frame = +2

Query: 143 IGSIVATRTCYNENIEGEVLAFDPQTKMLILKCQSSSGNPKR----HDVNIVNLSLVSDV 310
           IG+ V   T    +  G V++FD   K+L+L  +  + N       +  ++ N+ ++S+ 
Sbjct: 13  IGACVEIETTNGLSARGVVISFDTTRKVLVLDTKEMAINKPMIRIFNSEHLKNIKVLSEA 72

Query: 311 QIKKEVSTVPEPPQSLNLHRLN-TRVRNSIENKR-RLVSAL--SACLDPEGQRLFMAIAR 478
             + E     +  Q    + +N TR    ++     L   L  S  +   GQ+ ++ + R
Sbjct: 73  LEESEKFARAKTEQFAQNNPVNGTRTTERLDKTLGELTPNLMKSPAISIRGQQAYLQLKR 132

Query: 479 VIDDVSWAGQSIRVYNNKIHQVMITPPYKVDDVIGEKDSQSYN 607
            I D  W G+ IRV    +  V++  PY+V DV  +  +  ++
Sbjct: 133 TIPDTCWCGEDIRV----LGLVLVHKPYEVSDVTKDAKATGFD 171


>Z34802-8|CAH10787.1|  704|Caenorhabditis elegans Hypothetical
           protein M88.5b protein.
          Length = 704

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = +1

Query: 178 RKHRRRGPSFRSSNKNVDSEMPIVQRQPETARRQHREPVPRQRRSNQ 318
           +K +RRG       +N  S+    Q+Q + AR+QH + + +Q++SNQ
Sbjct: 7   KKPQRRGNQSGQQQQNQPSQQNNQQQQNQGARQQHPQQMQQQQQSNQ 53


>Z34802-7|CAA84338.2|  828|Caenorhabditis elegans Hypothetical
           protein M88.5a protein.
          Length = 828

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +1

Query: 172 LQRKHRRRGPSFRSSNKNVDSEMPIVQRQPETARRQHREPVPRQRRSNQ 318
           + +  +RRG       +N  S+    Q+Q + AR+QH + + +Q++SNQ
Sbjct: 129 MMQHQQRRGNQSGQQQQNQPSQQNNQQQQNQGARQQHPQQMQQQQQSNQ 177


>AL117195-12|CAB60765.1|  425|Caenorhabditis elegans Hypothetical
           protein Y57A10A.19 protein.
          Length = 425

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +1

Query: 145 RQYSRHAHLLQRKHRRRGPSFRSSNKNVDSEMPIVQRQPETARRQHREPVPRQRRSNQ 318
           R   R      R+ RRR P      +    +  + +R PE  RRQ R P   +R+S Q
Sbjct: 273 RSVERQDQREDRRDRRRSPEDPRERRRSPEDRTVRRRSPER-RRQQRSPSVERRKSPQ 329


>AC024200-11|AAF36000.1|  271|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.6 protein.
          Length = 271

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 640 RSSHACAPTINLTYIETLLYYNYYIYLP 723
           R  +    T+++ YI++ +YY Y+IY+P
Sbjct: 4   RQHYRSLSTVDIIYIKSTIYYIYHIYIP 31


>L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform b protein.
          Length = 650

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 338 PEPPQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLF 463
           P+ PQ L+ H  +   +N I     + SA S+C  P+G   F
Sbjct: 85  PQQPQLLHHHNNHLGYQNGIHQITSINSAASSCSSPDGDSAF 126


>L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform a protein.
          Length = 667

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 338 PEPPQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLF 463
           P+ PQ L+ H  +   +N I     + SA S+C  P+G   F
Sbjct: 102 PQQPQLLHHHNNHLGYQNGIHQITSINSAASSCSSPDGDSAF 143


>L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform c protein.
          Length = 779

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 338 PEPPQSLNLHRLNTRVRNSIENKRRLVSALSACLDPEGQRLF 463
           P+ PQ L+ H  +   +N I     + SA S+C  P+G   F
Sbjct: 214 PQQPQLLHHHNNHLGYQNGIHQITSINSAASSCSSPDGDSAF 255


>Z97628-2|CAB10726.2|  427|Caenorhabditis elegans Hypothetical
           protein F39H2.2a protein.
          Length = 427

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 250 QRQPETARRQHREPVPRQRRS 312
           QR+PE  R   R P PR+RRS
Sbjct: 343 QRRPEVKRSHQRSPSPRRRRS 363


>Z81080-5|CAB03088.2|  427|Caenorhabditis elegans Hypothetical
           protein F39H2.2a protein.
          Length = 427

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 250 QRQPETARRQHREPVPRQRRS 312
           QR+PE  R   R P PR+RRS
Sbjct: 343 QRRPEVKRSHQRSPSPRRRRS 363


>Z81080-2|CAD56584.1|  358|Caenorhabditis elegans Hypothetical
           protein F39H2.2b protein.
          Length = 358

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 250 QRQPETARRQHREPVPRQRRS 312
           QR+PE  R   R P PR+RRS
Sbjct: 274 QRRPEVKRSHQRSPSPRRRRS 294


>U13876-16|AAW88394.1|  420|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 6, isoform b
           protein.
          Length = 420

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 21/78 (26%), Positives = 33/78 (42%)
 Frame = +2

Query: 257 NPKRHDVNIVNLSLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKRRLVSALSAC 436
           N  RH  N+V      D  IKK+  ++ E    L  ++    +RN IE  R  + +L   
Sbjct: 20  NVIRHLTNLVKSPASGDDDIKKKEDSIMELGNILAQNKQTEELRNMIEQTRPFLVSLGKA 79

Query: 437 LDPEGQRLFMAIARVIDD 490
              +  R  + +   IDD
Sbjct: 80  KAAKLVRDLVDLCLKIDD 97


>U13876-15|AAA21173.2|  438|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 6, isoform a
           protein.
          Length = 438

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 21/78 (26%), Positives = 33/78 (42%)
 Frame = +2

Query: 257 NPKRHDVNIVNLSLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKRRLVSALSAC 436
           N  RH  N+V      D  IKK+  ++ E    L  ++    +RN IE  R  + +L   
Sbjct: 38  NVIRHLTNLVKSPASGDDDIKKKEDSIMELGNILAQNKQTEELRNMIEQTRPFLVSLGKA 97

Query: 437 LDPEGQRLFMAIARVIDD 490
              +  R  + +   IDD
Sbjct: 98  KAAKLVRDLVDLCLKIDD 115


>AL132860-26|CAB60511.2|  700|Caenorhabditis elegans Hypothetical
           protein Y56A3A.32 protein.
          Length = 700

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/61 (22%), Positives = 26/61 (42%)
 Frame = +1

Query: 139 HDRQYSRHAHLLQRKHRRRGPSFRSSNKNVDSEMPIVQRQPETARRQHREPVPRQRRSNQ 318
           H +   +H    ++KH  +  +     +    E P   ++PE A++Q  +  P Q    Q
Sbjct: 110 HAKHSKKHEEKHEQKHEEKEHAEPEKKEEAKPEKPAEPKEPEPAQKQAEQ--PEQAEEKQ 167

Query: 319 E 321
           E
Sbjct: 168 E 168


>Z92790-4|CAB07227.2|  227|Caenorhabditis elegans Hypothetical
           protein H03G16.5 protein.
          Length = 227

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 320 KEVST--VPEPPQSLNLHRLNTRVRNSIENKRRLVSALSACLD 442
           KE+S   V +   ++NL RL TRV   I+NK  L+    A L+
Sbjct: 65  KEISKKKVFKMDDTMNLLRLGTRVHLIIQNKEELIDKYKAMLE 107


>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
           protein Y51H4A.12 protein.
          Length = 1677

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +1

Query: 136 LHDRQYSRHAHLLQRKHRRRGPSFRSSNKNVDSEMPIVQR--QPETARRQHREPVPRQRR 309
           +H +Q  +H H +    R+R  S R     +   MP+ Q+   P  ++ QH + +  + R
Sbjct: 709 MHHQQQQQHHHQMPMDQRKRHSSGRYD--ALMGAMPLQQQPPPPPPSQFQHTDSIAHRPR 766

Query: 310 SNQEGSIH 333
              +G+ H
Sbjct: 767 GRPKGTRH 774


>AC006676-4|AAK71380.1|  288|Caenorhabditis elegans Hypothetical
           protein M04F3.1 protein.
          Length = 288

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +1

Query: 229 DSEMPIVQRQPETARRQHREPVPRQRRSNQEGSIHGTRAPPIIELAQIEHKS 384
           D +  I + + E AR   ++ V  + +S       G  APP   ++Q  H+S
Sbjct: 148 DKDFTIFELEAEAARLFFQKNVSEKLKSVDSDGFQGMLAPPKSRMSQTSHQS 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,515,520
Number of Sequences: 27780
Number of extensions: 388650
Number of successful extensions: 1279
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)