Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23f08
(723 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 27 0.18
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 26 0.41
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 25 0.55
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 25 0.72
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 23 2.2
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 23 2.2
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 23 2.2
AY375535-1|AAQ82648.1| 147|Apis mellifera doublesex protein. 23 2.9
DQ435324-1|ABD92639.1| 152|Apis mellifera OBP3 protein. 23 3.9
EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 22 6.7
AB244761-1|BAE66603.1| 504|Apis mellifera cystathionine beta-sy... 21 8.9
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 27.1 bits (57), Expect = 0.18
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +1
Query: 592 FPVV*LH*EIRRKTLARSSHACAPTINLTYIETLLYY 702
+P + + +RRKTL + + P ++++Y+ L +Y
Sbjct: 222 YPDIFFNITLRRKTLFYTVNLIVPCVSISYLSVLAFY 258
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 25.8 bits (54), Expect = 0.41
Identities = 16/59 (27%), Positives = 24/59 (40%)
Frame = +1
Query: 130 GLLHDRQYSRHAHLLQRKHRRRGPSFRSSNKNVDSEMPIVQRQPETARRQHREPVPRQR 306
GL+ RH HL H + + + D P Q+Q + R+Q R+ R R
Sbjct: 131 GLIKQETLQRHHHLQNHHHHLQSTAVQ------DHHRPYQQQQQQQQRQQQRQEERRLR 183
Score = 21.4 bits (43), Expect = 8.9
Identities = 11/41 (26%), Positives = 17/41 (41%)
Frame = +1
Query: 247 VQRQPETARRQHREPVPRQRRSNQEGSIHGTRAPPIIELAQ 369
V +PE P P R N +GS T P + +++
Sbjct: 1365 VPERPERVPTVDLSPSPSDRGRNDDGSDRLTSPPTPLSISR 1405
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 25.4 bits (53), Expect = 0.55
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = +1
Query: 592 FPVV*LH*EIRRKTLARSSHACAPTINLTYIETLLYY 702
+P + + +RRKTL + + P + ++++ L++Y
Sbjct: 223 YPDIVFNITLRRKTLFYTVNLIIPCVGISFLSVLVFY 259
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 25.0 bits (52), Expect = 0.72
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 619 IRRKTLARSSHACAPTINLTYIETLLYY 702
IRRKTL + + PT+ ++++ L++Y
Sbjct: 229 IRRKTLFYTVNLILPTVLISFLCVLVFY 256
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.4 bits (48), Expect = 2.2
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +1
Query: 121 RRFGLLHDRQYSRHAHLLQRKHRRRGPSFRSSNKNVDSEMPIVQRQPETARRQHREPVPR 300
RR+ LH+ + L +R +R+R R +N ++ ET++ + R+ R
Sbjct: 16 RRYEKLHNE---KEKLLEERTNRKRNSRSREREQNSYKNEREYRKYRETSKERSRDRTER 72
Query: 301 QR 306
+R
Sbjct: 73 ER 74
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.4 bits (48), Expect = 2.2
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +1
Query: 121 RRFGLLHDRQYSRHAHLLQRKHRRRGPSFRSSNKNVDSEMPIVQRQPETARRQHREPVPR 300
RR+ LH+ + L +R +R+R R +N ++ ET++ + R+ R
Sbjct: 16 RRYEKLHNE---KEKLLEERTNRKRNSRSREREQNSYKNEREYRKYRETSKERSRDRAER 72
Query: 301 QR 306
+R
Sbjct: 73 ER 74
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 23.4 bits (48), Expect = 2.2
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 263 KRHDVNIVNLSLVSDVQIKKEVSTVPEPP 349
K +VN ++ + +V+IK +V+ P PP
Sbjct: 313 KSLEVNHISARVGDNVEIKCDVTGTPPPP 341
>AY375535-1|AAQ82648.1| 147|Apis mellifera doublesex protein.
Length = 147
Score = 23.0 bits (47), Expect = 2.9
Identities = 7/15 (46%), Positives = 13/15 (86%)
Frame = +2
Query: 314 IKKEVSTVPEPPQSL 358
++ +S+VP+PP+SL
Sbjct: 49 VENTISSVPQPPRSL 63
>DQ435324-1|ABD92639.1| 152|Apis mellifera OBP3 protein.
Length = 152
Score = 22.6 bits (46), Expect = 3.9
Identities = 12/53 (22%), Positives = 27/53 (50%)
Frame = +2
Query: 281 IVNLSLVSDVQIKKEVSTVPEPPQSLNLHRLNTRVRNSIENKRRLVSALSACL 439
+ L +VS + ++ + T+ ++LNL +++ + + E R + ACL
Sbjct: 8 LFTLCIVSYMMVRCDDITLCLKQENLNLDDIDSLLEDESERMLRKRGCIEACL 60
>EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein.
Length = 686
Score = 21.8 bits (44), Expect = 6.7
Identities = 9/39 (23%), Positives = 20/39 (51%)
Frame = +2
Query: 521 YNNKIHQVMITPPYKVDDVIGEKDSQSYNYIKKFVERHW 637
Y++K + P YK+D + + + +Y Y + + +W
Sbjct: 206 YSSKYMREYNDPEYKLDYFMEDVELNAYYYYMREMLPYW 244
>AB244761-1|BAE66603.1| 504|Apis mellifera cystathionine
beta-synthase protein.
Length = 504
Score = 21.4 bits (43), Expect = 8.9
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = +2
Query: 605 NYIKKFVERHWRD 643
NY+ KFV +W +
Sbjct: 338 NYLTKFVSEYWME 350
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,377
Number of Sequences: 438
Number of extensions: 4833
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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