Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23e18
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0133 - 31906305-31906582,31906820-31907105,31907442-319075...    32   0.50 
09_04_0394 - 17261008-17262476,17262554-17262743                       29   4.7  
08_01_0083 - 604175-605776                                             28   6.2  
08_01_0082 - 588269-588434,590800-591653                               28   6.2  
01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962     28   6.2  
07_01_0042 - 334417-334431,334563-334688,334852-335136,335220-33...    28   8.1  
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218...    28   8.1  

>03_06_0133 -
           31906305-31906582,31906820-31907105,31907442-31907566,
           31907645-31907759,31907852-31908485,31911425-31911555,
           31912308-31912397,31912440-31912486,31913707-31913761,
           31914576-31914908,31915278-31915337,31915427-31915618,
           31916149-31916220,31916307-31916435
          Length = 848

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 20/59 (33%), Positives = 31/59 (52%)
 Frame = -3

Query: 605 TRNYVKTLNCKLFDIKPPKFKKGTFRQYSLQVFPKLQKFIVEKKGKAYQHWVYAQKENQ 429
           T N  ++ N  + D K  K  +G+ +  +L     LQKF+V K     Q+W  AQ+E+Q
Sbjct: 737 TNNLAESFNNWIKDYKASKVGRGS-QGGTLPNMGILQKFLVPKDQLCRQYWKKAQEESQ 794


>09_04_0394 - 17261008-17262476,17262554-17262743
          Length = 552

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -3

Query: 311 KPNEGRRRNRFVPSLLSDVWNVWLLIVAC 225
           KP    RR   +PS  S VW V LL+V C
Sbjct: 4   KPTRPHRRPPPLPSKTSGVWPVALLVVLC 32


>08_01_0083 - 604175-605776
          Length = 533

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 95  TPAPFFSRYHTQTQKLGLQTPPG*TSHI-QKIQEPFIDK 208
           TPAP F R+  +T  + +  P G   HI ++++ P + +
Sbjct: 218 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLERPEVQE 256


>08_01_0082 - 588269-588434,590800-591653
          Length = 339

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 95  TPAPFFSRYHTQTQKLGLQTPPG*TSHI-QKIQEPFIDK 208
           TPAP F R+  +T  + +  P G   HI ++++ P + +
Sbjct: 221 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLERPEVQE 259


>01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962
          Length = 774

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 214 EVTEHATINSQTFHTSDSSEGTKRFRRLPSF 306
           +++EH T  S+  HT  S+   ++ RRL SF
Sbjct: 696 KISEHDTDKSRRPHTKKSATSPRKMRRLSSF 726


>07_01_0042 -
           334417-334431,334563-334688,334852-335136,335220-335368,
           336239-336536,337030-337131,337245-337613,337973-338115,
           338334-338518,339246-339475,339734-339821,340158-340253,
           340397-340512,340604-340852,340950-341175,341411-341622
          Length = 962

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 26/88 (29%), Positives = 38/88 (43%)
 Frame = +1

Query: 433 FSFCAYTQCWYAFPFFSTINFCNLGNTCKEYCRKVPFLNLGGFMSNSLQFRVFT*FLVLN 612
           FS   Y +C  A+P F   +   LGN  K   +   F  +GGF+   L F +F       
Sbjct: 619 FSGATY-ECKAAYPSFDDSSGIALGNILKFRKKNWQFDTIGGFIYFILVFSMFP------ 671

Query: 613 RLLCNSWHGQQQSTPSVRSINSYNSVYS 696
              CN  H   + T S R  +  N+++S
Sbjct: 672 --QCNLGHILNEETWSGRLGSFSNTIWS 697


>05_01_0281 +
           2186500-2187435,2187518-2187616,2187707-2187772,
           2187850-2188266
          Length = 505

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 114 LKNGAGVSNHMWHRLKNDDGDDKPCLN 34
           L  G G +NH  H   +DD DD P L+
Sbjct: 56  LMRGGGAANHHHHDDDDDDDDDVPWLH 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,185,256
Number of Sequences: 37544
Number of extensions: 339543
Number of successful extensions: 832
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)