Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23e18
(697 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical p... 29 2.4
U41625-5|AAA83327.1| 700|Caenorhabditis elegans Suppressor of a... 29 2.4
AY091467-1|AAM44123.1| 700|Caenorhabditis elegans SUR-5 protein. 29 2.4
AL032627-7|CAD56256.1| 306|Caenorhabditis elegans Hypothetical ... 29 3.2
AL032627-6|CAD56255.1| 331|Caenorhabditis elegans Hypothetical ... 29 3.2
AL032627-5|CAD45607.2| 314|Caenorhabditis elegans Hypothetical ... 29 3.2
AL032627-4|CAB54382.2| 327|Caenorhabditis elegans Hypothetical ... 29 3.2
AL032627-3|CAB54381.2| 325|Caenorhabditis elegans Hypothetical ... 29 3.2
AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical ... 29 3.2
AB081596-1|BAC19843.1| 325|Caenorhabditis elegans cyclic AMP-re... 29 3.2
AB081595-1|BAC19842.1| 306|Caenorhabditis elegans cyclic AMP-re... 29 3.2
U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical pr... 28 5.5
U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical pr... 28 5.5
U64836-4|AAG24059.1| 417|Caenorhabditis elegans Hypothetical pr... 27 9.7
U42436-9|AAF99893.1| 109|Caenorhabditis elegans Hypothetical pr... 27 9.7
>U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical
protein B0222.9 protein.
Length = 1217
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 216 FGGLSMNGSWIFCMCEVYPGGVCNPSF 136
FGG N SWI CMC + + P++
Sbjct: 708 FGGKVNNASWIACMCAIVAKKLNRPTY 734
>U41625-5|AAA83327.1| 700|Caenorhabditis elegans Suppressor of
activated let-60ras protein 5 protein.
Length = 700
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +2
Query: 170 SHIQKIQEPFIDKPPKLQNTLLLTARHSTHPTVAKERSDFVACPRLAFDCYKI 328
SH+QK+Q P KPP+ T L+ R+ K+ +D+ R D Y I
Sbjct: 38 SHVQKLQ-PVYYKPPQNLETFELSLRNHFEEKTNKKFADYREFHRFTCDNYGI 89
>AY091467-1|AAM44123.1| 700|Caenorhabditis elegans SUR-5 protein.
Length = 700
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +2
Query: 170 SHIQKIQEPFIDKPPKLQNTLLLTARHSTHPTVAKERSDFVACPRLAFDCYKI 328
SH+QK+Q P KPP+ T L+ R+ K+ +D+ R D Y I
Sbjct: 38 SHVQKLQ-PVYYKPPQNLETFELSLRNHFEEKTNKKFADYREFHRFTCDNYGI 89
>AL032627-7|CAD56256.1| 306|Caenorhabditis elegans Hypothetical
protein Y41C4A.4e protein.
Length = 306
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 451 CTRKKKIKHRQILNDKVIYLQNSNKNKLFELSGLSLKSCRHD 326
C RKKK ++ + L ++V L+N NK + EL L CR +
Sbjct: 262 CRRKKK-EYVKCLENRVSVLENQNKALIEELKTLKELYCRKE 302
>AL032627-6|CAD56255.1| 331|Caenorhabditis elegans Hypothetical
protein Y41C4A.4d protein.
Length = 331
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 451 CTRKKKIKHRQILNDKVIYLQNSNKNKLFELSGLSLKSCRHD 326
C RKKK ++ + L ++V L+N NK + EL L CR +
Sbjct: 287 CRRKKK-EYVKCLENRVSVLENQNKALIEELKTLKELYCRKE 327
>AL032627-5|CAD45607.2| 314|Caenorhabditis elegans Hypothetical
protein Y41C4A.4c protein.
Length = 314
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 451 CTRKKKIKHRQILNDKVIYLQNSNKNKLFELSGLSLKSCRHD 326
C RKKK ++ + L ++V L+N NK + EL L CR +
Sbjct: 270 CRRKKK-EYVKCLENRVSVLENQNKALIEELKTLKELYCRKE 310
>AL032627-4|CAB54382.2| 327|Caenorhabditis elegans Hypothetical
protein Y41C4A.4b protein.
Length = 327
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 451 CTRKKKIKHRQILNDKVIYLQNSNKNKLFELSGLSLKSCRHD 326
C RKKK ++ + L ++V L+N NK + EL L CR +
Sbjct: 283 CRRKKK-EYVKCLENRVSVLENQNKALIEELKTLKELYCRKE 323
>AL032627-3|CAB54381.2| 325|Caenorhabditis elegans Hypothetical
protein Y41C4A.4a protein.
Length = 325
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 451 CTRKKKIKHRQILNDKVIYLQNSNKNKLFELSGLSLKSCRHD 326
C RKKK ++ + L ++V L+N NK + EL L CR +
Sbjct: 281 CRRKKK-EYVKCLENRVSVLENQNKALIEELKTLKELYCRKE 321
>AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical
protein F15E6.6 protein.
Length = 1228
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 216 FGGLSMNGSWIFCMCEVYPGGVCNPSFCV 130
FGG N SWI C+C V + P++ V
Sbjct: 740 FGGKLNNASWIACICSVVAKKLNRPTYGV 768
>AB081596-1|BAC19843.1| 325|Caenorhabditis elegans cyclic
AMP-response element bindingprotein 1 gamma 2 protein.
Length = 325
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 451 CTRKKKIKHRQILNDKVIYLQNSNKNKLFELSGLSLKSCRHD 326
C RKKK ++ + L ++V L+N NK + EL L CR +
Sbjct: 281 CRRKKK-EYVKCLENRVSVLENQNKALIEELKTLKELYCRKE 321
>AB081595-1|BAC19842.1| 306|Caenorhabditis elegans cyclic
AMP-response element bindingprotein 1 beta protein.
Length = 306
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -1
Query: 451 CTRKKKIKHRQILNDKVIYLQNSNKNKLFELSGLSLKSCRHD 326
C RKKK ++ + L ++V L+N NK + EL L CR +
Sbjct: 262 CRRKKK-EYVKCLENRVSVLENQNKALIEELKTLKELYCRKE 302
>U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical
protein F46F11.9b protein.
Length = 1282
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 251 STHPTVAKERSDFVACPRLAFDCYKIVSARF 343
S H +A R A P L+FDCY++ F
Sbjct: 516 SFHRVLAANRFSNAAIPALSFDCYRLALPAF 546
>U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical
protein F46F11.9a protein.
Length = 1280
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 251 STHPTVAKERSDFVACPRLAFDCYKIVSARF 343
S H +A R A P L+FDCY++ F
Sbjct: 514 SFHRVLAANRFSNAAIPALSFDCYRLALPAF 544
>U64836-4|AAG24059.1| 417|Caenorhabditis elegans Hypothetical
protein F10G2.3 protein.
Length = 417
Score = 27.5 bits (58), Expect = 9.7
Identities = 8/29 (27%), Positives = 16/29 (55%)
Frame = +1
Query: 442 CAYTQCWYAFPFFSTINFCNLGNTCKEYC 528
C Y Y + +++ +F NTC+++C
Sbjct: 161 CIYNYNGYCYDYYAEASFVVAQNTCEQFC 189
>U42436-9|AAF99893.1| 109|Caenorhabditis elegans Hypothetical
protein C49H3.3 protein.
Length = 109
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 166 DLAHTEDPGAVH*QAAEVTEHATINSQTFHTSDSS 270
D T+ G + + EVT ATIN++T D S
Sbjct: 43 DAEKTKTDGTANEEKMEVTSQATINTKTLKKKDGS 77
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,384,273
Number of Sequences: 27780
Number of extensions: 327522
Number of successful extensions: 880
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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