Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23e12
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    27   0.24 
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    25   0.74 
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    25   0.74 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   2.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.3  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   5.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.1  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 622 LQVWQNALPEPLLLQERPNWT 684
           L  W   +P+P +L+ +P WT
Sbjct: 28  LPSWDGKMPQPCILKPKPLWT 48


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
 Frame = +1

Query: 229 VVVVDGCPQVGPE---RLEKLQSVINKIFSK-FGKIVNEY 336
           +V+   CPQ  PE   +++K+ S I + + K + KIV +Y
Sbjct: 74  LVLRGACPQCSPEETRQIKKVLSHIQRTYPKEWSKIVQQY 113


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 25.0 bits (52), Expect = 0.74
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
 Frame = +1

Query: 229 VVVVDGCPQVGPE---RLEKLQSVINKIFSK-FGKIVNEY 336
           +V+   CPQ  PE   +++K+ S I + + K + KIV +Y
Sbjct: 74  LVLRGACPQCSPEETRQIKKVLSHIQRTYPKEWSKIVQQY 113


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 457 FLVNLFTDFQKYSDIPKEWEPPAPQPFKVQSDLQWYLMD 573
           F V L T    Y     EW+PPA      + D++++  D
Sbjct: 125 FEVTLATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFD 163


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 253 QVGPERLEKLQSVINKIFSKFGKIVNE 333
           Q+ P+R++  Q   N++++   KIV+E
Sbjct: 324 QITPKRIQYAQHKENELYANLMKIVHE 350


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 253 QVGPERLEKLQSVINKIFSKFGKIVNE 333
           Q+ P+R++  Q   N++++   KIV+E
Sbjct: 362 QITPKRIQYAQHKENELYANLMKIVHE 388


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 147 LWVVKI-RFFFKVLFLIVTLRSWIRF 73
           +++ K+ RFFF   FLI+ +  W  F
Sbjct: 357 IYIDKVSRFFFPFSFLILNVVYWSTF 382


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +1

Query: 541  VQSDLQWYLMDPDAYDQFLVGIGTGVA--LQVWQNALPEPLLLQERPNWTETYAVW 702
            V+S   +Y+         LVG GTG+A     W + L E   ++ RP+  E   VW
Sbjct: 952  VRSAPNFYMPSEPKAPMILVGPGTGIAPFRGFWHHRLAE---IKRRPD-LEYGKVW 1003


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 508 EWEPPAPQPFKVQSDLQWYLMD 573
           EW+PPA      + D++++  D
Sbjct: 138 EWKPPAIYKSSCEIDVEYFPFD 159


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 352 NGLTTGYIFLEYSNPQNAAEAVKA 423
           N L   Y F +YSN   A E++ A
Sbjct: 23  NVLDFDYYFYDYSNRTQALESIIA 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.135    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,646
Number of Sequences: 438
Number of extensions: 4876
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)