Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23e10
         (417 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0394 - 17261008-17262476,17262554-17262743                       29   2.0  
01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962     28   2.6  
08_01_0083 - 604175-605776                                             28   3.5  
08_01_0082 - 588269-588434,590800-591653                               28   3.5  
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218...    28   3.5  
04_04_0532 + 26058100-26058229,26058355-26058559,26058678-260591...    28   3.5  
12_01_0827 - 7662180-7662192,7662451-7662764                           27   4.6  

>09_04_0394 - 17261008-17262476,17262554-17262743
          Length = 552

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -2

Query: 314 KPNEGRRRNRFVPSLLSDVWNVWLLIVAC 228
           KP    RR   +PS  S VW V LL+V C
Sbjct: 4   KPTRPHRRPPPLPSKTSGVWPVALLVVLC 32


>01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962
          Length = 774

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 217 EVTEHATINSQTFHTSDSSEGTKRFRRLPSF 309
           +++EH T  S+  HT  S+   ++ RRL SF
Sbjct: 696 KISEHDTDKSRRPHTKKSATSPRKMRRLSSF 726


>08_01_0083 - 604175-605776
          Length = 533

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 98  TPAPFFSRYHXQTQKLGLXTPPG*TSHI-QKIQEPFIDK 211
           TPAP F R+  +T  + +  P G   HI ++++ P + +
Sbjct: 218 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLERPEVQE 256


>08_01_0082 - 588269-588434,590800-591653
          Length = 339

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 98  TPAPFFSRYHXQTQKLGLXTPPG*TSHI-QKIQEPFIDK 211
           TPAP F R+  +T  + +  P G   HI ++++ P + +
Sbjct: 221 TPAPVFRRWFVETSPVPIPMPVGKLQHIVRRLERPEVQE 259


>05_01_0281 +
           2186500-2187435,2187518-2187616,2187707-2187772,
           2187850-2188266
          Length = 505

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 117 LKNGAGVSNHMWHRLKNDDGDDKPCLN 37
           L  G G +NH  H   +DD DD P L+
Sbjct: 56  LMRGGGAANHHHHDDDDDDDDDVPWLH 82


>04_04_0532 +
           26058100-26058229,26058355-26058559,26058678-26059157,
           26059262-26059354,26059526-26059636,26059720-26059792,
           26060072-26060208,26061040-26061097
          Length = 428

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 118 PVSXADAEARVTDAARVDLAHTEDPGAVH*QAAE 219
           P +   A  R T  A+VD A  EDPG +   A E
Sbjct: 87  PQAPPPAPTRATKKAKVDAAKNEDPGGMSAPAKE 120


>12_01_0827 - 7662180-7662192,7662451-7662764
          Length = 108

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 215 PKLQNTLLLTARH--STHPTVAKERSDFVACPR 307
           PK Q T++ +AR   +T   + ++RSD  ACPR
Sbjct: 25  PKTQQTVVPSARGPTATDQVLPRQRSDRSACPR 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,974,922
Number of Sequences: 37544
Number of extensions: 189303
Number of successful extensions: 528
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)