Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23e09
         (677 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    91   1e-20
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    27   0.19 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   2.3  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    22   5.3  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   7.0  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    21   7.0  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 90.6 bits (215), Expect = 1e-20
 Identities = 53/143 (37%), Positives = 76/143 (53%), Gaps = 6/143 (4%)
 Frame = +1

Query: 205 PDDIRTFKDFPLSQKTLNGLKANNYVTPTEIQKQAIGYALQGKDILGAAKTGSGKTLAFL 384
           P  I +F+   L    L  +K + Y  PT IQK AI   L G+D++  A+TGSGKT AF+
Sbjct: 154 PPPITSFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGRDLMSCAQTGSGKTAAFM 213

Query: 385 IPILENLFCKK-----WTRLDGVGALVISPTRELAYQIYETLRKIGHFHDFSAGLIIGGQ 549
           +PI+ NL   K              +++SPTRELA QI +  +K  +       +I GG 
Sbjct: 214 LPIIHNLLSDKNPPNTENNCAQPVVVIMSPTRELAIQIADQGKKFAYNSTVKVAVIYGGT 273

Query: 550 NLKFERKR-MDQINILICTPGRL 615
           +   +R R +   +IL+ TPGRL
Sbjct: 274 STNHQRGRILGGCHILVATPGRL 296


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = -3

Query: 216 YVIRIYLFILPL*IFDCGIFLKAFFLTWFIQQNFLTPSLSFWVFFFLFHCKITF 55
           +++ IY F++PL    C  +    F+ + +   FL     F+  F +F   + F
Sbjct: 129 FLLCIYYFVVPLFFLLCIYYFYCAFIIFTVHLLFLLCIYHFFCAFIIFTMHLLF 182


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 196 KINPDDIRTFKDFPLSQKT 252
           K +P+ I   ++FP+ QKT
Sbjct: 514 KADPEKISAIRNFPVPQKT 532


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -1

Query: 293 SVGVT*LFALSPFRVFWERGKSLKVLMSSG 204
           SVGV+   +L  F+V   R +++++ +++G
Sbjct: 23  SVGVSNEVSLPQFKVLGHRQRAMEISLTTG 52


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 406 FCKKWTRLDGVGALVISPTRELAYQ 480
           F  KW R  G  A + SP+ +  YQ
Sbjct: 281 FHGKWERETGHNAPLYSPSSDSQYQ 305


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -1

Query: 293 SVGVT*LFALSPFRVFWERGKSLKVLMSSG 204
           SVGV+   +L  F+V   R +++++ +++G
Sbjct: 205 SVGVSSEVSLPQFKVLGHRRRAVEISLTTG 234


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,012
Number of Sequences: 336
Number of extensions: 4155
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)