Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc23e09
(677 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 214 1e-56
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 137 2e-33
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 115 5e-27
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 105 8e-24
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 94 2e-20
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 91 1e-19
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 91 2e-19
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 90 2e-19
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 90 3e-19
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 89 5e-19
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 89 7e-19
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 88 1e-18
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 86 5e-18
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 83 4e-17
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 83 5e-17
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 77 2e-15
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 75 7e-15
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 73 5e-14
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 72 7e-14
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 68 1e-12
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 66 4e-12
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 64 2e-11
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 56 4e-09
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 40 3e-04
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 34 0.016
SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit Tfa2... 28 1.1
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 1.9
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 1.9
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 27 3.3
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||... 26 4.4
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 26 4.4
SPCC61.05 |||S. pombe specific multicopy membrane protein family... 26 4.4
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 26 4.4
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 26 5.8
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 25 7.6
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M... 25 7.6
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 7.6
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 7.6
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 214 bits (522), Expect = 1e-56
Identities = 103/174 (59%), Positives = 135/174 (77%)
Frame = +1
Query: 154 EEDAAIKYLQGQYEKINPDDIRTFKDFPLSQKTLNGLKANNYVTPTEIQKQAIGYALQGK 333
EE+ I+ L Q E ++ + + F + PL+Q T + LK +++T TEIQKQ I AL+G+
Sbjct: 19 EEEEEIEELNSQIEALS-ETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGR 77
Query: 334 DILGAAKTGSGKTLAFLIPILENLFCKKWTRLDGVGALVISPTRELAYQIYETLRKIGHF 513
DILGAAKTGSGKTLAF++P++ENL+ KKWT LDG+GALVISPTRELA Q +ETL KIG
Sbjct: 78 DILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRL 137
Query: 514 HDFSAGLIIGGQNLKFERKRMDQINILICTPGRLLQHMDENPLFDCSHLQIVVL 675
H FSAGLIIGG N K E++R+ ++NIL+CTPGRLLQH+D+ FD S LQ+++L
Sbjct: 138 HSFSAGLIIGGNNYKEEKERLSRMNILVCTPGRLLQHIDQAVNFDTSGLQMLIL 191
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 137 bits (331), Expect = 2e-33
Identities = 69/156 (44%), Positives = 100/156 (64%), Gaps = 1/156 (0%)
Frame = +1
Query: 211 DIRTFKDFPLSQKTLNGLKANNYVTPTEIQKQAIGYALQGKDILGAAKTGSGKTLAFLIP 390
DI F D LS+ +K + T TEIQK++I L G+D+LGAAKTGSGKTLAFLIP
Sbjct: 87 DIEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIP 146
Query: 391 ILENLFCKKWTRLDGVGALVISPTRELAYQIYETLRKIGHFHDFSAGLIIGGQNLKFER- 567
+E L+ K+ +G G ++ISPTRELA QI+ +++ +H + G++IGG N + E
Sbjct: 147 TIEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEAD 206
Query: 568 KRMDQINILICTPGRLLQHMDENPLFDCSHLQIVVL 675
K + +N+L+ TPGRLL H+ F +L+ +V+
Sbjct: 207 KLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVI 242
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 115 bits (277), Expect = 5e-27
Identities = 69/179 (38%), Positives = 102/179 (56%), Gaps = 5/179 (2%)
Frame = +1
Query: 154 EEDAAIK---YLQGQYEK-INPDDIRTFKDFPLSQKTLNGLKANNYVTPTEIQKQAIGYA 321
EE+ A K + +G EK + +F+ LS+ L GL + PT+IQ + I A
Sbjct: 234 EEEIAKKNAFFAEGDKEKSMMTTTHSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLA 293
Query: 322 LQGKDILGAAKTGSGKTLAFLIPILENLFCKKWTRLDGVGALVISPTRELAYQIYETLRK 501
L GKDI+GAA TGSGKT AF++PILE L + ++ L++ PTRELA Q + K
Sbjct: 294 LLGKDIVGAAVTGSGKTAAFIVPILERLLYRP-KKVPTTRVLILCPTRELAMQCHSVATK 352
Query: 502 IGHFHDFSAGLIIGGQNLKFERKRM-DQINILICTPGRLLQHMDENPLFDCSHLQIVVL 675
I F D L IGG +LK + + + + +I+I TPGR + HM + F +++I+V+
Sbjct: 353 IASFTDIMVCLCIGGLSLKLQEQELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVM 411
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 105 bits (251), Expect = 8e-24
Identities = 53/159 (33%), Positives = 92/159 (57%), Gaps = 1/159 (0%)
Frame = +1
Query: 202 NPDDIRTFKDFPLSQKTLNGLKANNYVTPTEIQKQAIGYALQGKDILGAAKTGSGKTLAF 381
N + +TFK+ + + + + TPT IQ++AI L +D++G A+TGSGKT AF
Sbjct: 41 NNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAF 100
Query: 382 LIPILENLFCKKWTRLDGVGALVISPTRELAYQIYETLRKIGHFHDFSAGLIIGGQNLKF 561
+P+++ L W A+V++PTRELAYQI E IG + +I+GG ++
Sbjct: 101 ALPVIQEL----WNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVT 156
Query: 562 ERKRMD-QINILICTPGRLLQHMDENPLFDCSHLQIVVL 675
+ + + ++L+CTPGRL+ H++ F +L+ +++
Sbjct: 157 QAVALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIM 195
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 93.9 bits (223), Expect = 2e-20
Identities = 59/154 (38%), Positives = 84/154 (54%)
Frame = +1
Query: 214 IRTFKDFPLSQKTLNGLKANNYVTPTEIQKQAIGYALQGKDILGAAKTGSGKTLAFLIPI 393
I F + +S K GLK NY PT IQ Y L G+D++G A+TGSGKT+AF IP
Sbjct: 166 ILQFDELDVSAKLREGLK--NYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPA 223
Query: 394 LENLFCKKWTRLDGVGALVISPTRELAYQIYETLRKIGHFHDFSAGLIIGGQNLKFERKR 573
L+ L + LV+SPTRELA Q YE L + + A ++ GG + +
Sbjct: 224 LQYLNGLSDNK-SVPRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARA 282
Query: 574 MDQINILICTPGRLLQHMDENPLFDCSHLQIVVL 675
+++I TPGRLL +++ + DCS + +VL
Sbjct: 283 AKNASVIIGTPGRLLDLINDGSI-DCSQVGYLVL 315
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 91.5 bits (217), Expect = 1e-19
Identities = 54/144 (37%), Positives = 86/144 (59%), Gaps = 4/144 (2%)
Frame = +1
Query: 217 RTFKDFPLSQKTLNGLKANNYVTPTEIQKQAIGYALQGKDILGAAKTGSGKTLAFLIPIL 396
++F D +S ++ LKA PT+IQ+ I L+G++ +G AKTGSGKT AF +PI+
Sbjct: 7 KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPII 66
Query: 397 ENLFCKKWTR-LDGVGALVISPTRELAYQIYETLRKIGHFHDFSAGLIIGGQNLKFERKR 573
E KW++ G+ AL+++PTRELA QI E +G + LI+GG ++ R+
Sbjct: 67 E-----KWSKDPSGIFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDM--IRQS 119
Query: 574 MD---QINILICTPGRLLQHMDEN 636
+D + ++++ TPGRL + N
Sbjct: 120 IDLSKRPHVVVATPGRLADLIRSN 143
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 90.6 bits (215), Expect = 2e-19
Identities = 48/146 (32%), Positives = 84/146 (57%), Gaps = 2/146 (1%)
Frame = +1
Query: 205 PDDIRTFKDFPLSQKTLNGLKANNYVTPTEIQKQAIGYALQGKDILGAAKTGSGKTLAFL 384
P + ++ LS +T++ + + Y PT IQ QAI G+D++G AKTGSGKT+AFL
Sbjct: 414 PKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFL 473
Query: 385 IPILENLFCKKWTRL-DGVGALVISPTRELAYQIYETLRKIGHFHDFSAGLIIGGQNLKF 561
+P+ ++ ++ + +G A++++PTRELA QI+ + + A GG +K
Sbjct: 474 LPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKD 533
Query: 562 ERKRMDQ-INILICTPGRLLQHMDEN 636
+ + + I++CTPGR++ + N
Sbjct: 534 QIADLKRGAEIVVCTPGRMIDVLSAN 559
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 90.2 bits (214), Expect = 2e-19
Identities = 51/151 (33%), Positives = 85/151 (56%), Gaps = 1/151 (0%)
Frame = +1
Query: 223 FKDFPLSQKTLNGLKANNYVTPTEIQKQAIGYALQGKDILGAAKTGSGKTLAFLIPILEN 402
F+ L+Q L + + PT IQ++ I L+G+D++G A+TGSGKT AF+IP++E+
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 403 LFCKKWTRLDGVGALVISPTRELAYQIYETLRKIGHFHDFSAGLIIGGQNLKFERKRMD- 579
L K AL++SP RELA Q + ++ D + I+GG +L+ + +
Sbjct: 131 L--KSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSG 188
Query: 580 QINILICTPGRLLQHMDENPLFDCSHLQIVV 672
+ +I++ TPGR L H+ + S ++ VV
Sbjct: 189 KPDIVVATPGRFL-HLKVEMKLELSSIEYVV 218
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 89.8 bits (213), Expect = 3e-19
Identities = 54/142 (38%), Positives = 77/142 (54%), Gaps = 5/142 (3%)
Frame = +1
Query: 217 RTFKDFPLSQKTLNGLKANNYVTPTEIQKQAIGYALQGKDILGAAKTGSGKTLAFLIPIL 396
+TF DF L + + + PT +Q + I AL+GKD++ A+TGSGKT A+LIPIL
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPIL 73
Query: 397 ENLFCKKW--TRLDGVGALVISPTRELAYQIYETLRKIGHFHDFSAGLIIGGQNLKFERK 570
E L +K G+ AL++ PTRELA Q+Y L K+ F I N +
Sbjct: 74 ELLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDTVQ 133
Query: 571 R---MDQINILICTPGRLLQHM 627
R +D +I+I TP R + H+
Sbjct: 134 RPLLLDLPDIVIATPSRCVVHV 155
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 89.0 bits (211), Expect = 5e-19
Identities = 61/164 (37%), Positives = 89/164 (54%), Gaps = 7/164 (4%)
Frame = +1
Query: 205 PDDIRTFKDFPLSQKTLNGLKANNYVTPTEIQKQAIGYALQGKDILGAAKTGSGKTLAFL 384
P+ +R +++ L + L LK NY P+ IQ+ AI LQ KD++G A+TGSGKT AF+
Sbjct: 245 PNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFI 304
Query: 385 IPILENLFCKKWTRLD------GVGALVISPTRELAYQIYETLRKIGHFHDFSAGLIIGG 546
IP++ + K L G A+V++PTRELA QI K F ++GG
Sbjct: 305 IPLI--IAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGG 362
Query: 547 QNLKFERKRMDQ-INILICTPGRLLQHMDENPLFDCSHLQIVVL 675
+ + +M Q +I++ TPGRLL + E LF S VV+
Sbjct: 363 HAFEEQSFQMSQGAHIVVATPGRLLDCL-ERRLFVLSQCTYVVM 405
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 88.6 bits (210), Expect = 7e-19
Identities = 56/143 (39%), Positives = 80/143 (55%), Gaps = 9/143 (6%)
Frame = +1
Query: 274 NYVTPTEIQKQAIGYALQ--GKDILGAAKTGSGKTLAFLIPILENLF---CKKWTRLDGV 438
N PT IQ + L KD A+TGSGKTLA+L+PI++ L TR G+
Sbjct: 158 NISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGI 217
Query: 439 GALVISPTRELAYQIYETLRKIGH---FHDFSAGLIIGGQNLKFERKRMDQ-INILICTP 606
A++++PTREL QIY K+ + H + +IGG+ K E+ R+ + +NILI TP
Sbjct: 218 YAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGTP 277
Query: 607 GRLLQHMDENPLFDCSHLQIVVL 675
GRL H++ D S ++ VVL
Sbjct: 278 GRLADHLENTEALDVSQVRWVVL 300
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 88.2 bits (209), Expect = 1e-18
Identities = 49/133 (36%), Positives = 79/133 (59%), Gaps = 1/133 (0%)
Frame = +1
Query: 223 FKDFPLSQKTLNGLKANNYVTPTEIQKQAIGYALQGKDILGAAKTGSGKTLAFLIPILEN 402
F+D+ L ++ L G+ + P+ IQ+++I AL G+DIL AK G+GKT AF+IP LE
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 403 LFCKKWTRLDGVGALVISPTRELAYQIYETLRKIGHFHDFSAGLIIGGQNLKFERKRM-D 579
+ KK + L++ PTRELA Q + + +G + + GG L+ + R+ D
Sbjct: 106 VDTKK----SKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLND 161
Query: 580 QINILICTPGRLL 618
++I++ TPGR+L
Sbjct: 162 TVHIVVGTPGRVL 174
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 85.8 bits (203), Expect = 5e-18
Identities = 55/145 (37%), Positives = 81/145 (55%), Gaps = 1/145 (0%)
Frame = +1
Query: 211 DIRTFKDFPLSQKTLNGLKANNYVTPTEIQKQAIGYALQGKDILGAAKTGSGKTLAFLIP 390
D+ + F LS + L L + P IQ I A G DI+G A TGSGKTLAF IP
Sbjct: 120 DVSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIP 179
Query: 391 ILENLFCKKWTRLDGVGALVISPTRELAYQIYETLRKIGHFHDFSAGLIIGGQNLKFERK 570
ILE+ C + V ALV++PTRELA+QI + I + I GG ++ +++
Sbjct: 180 ILEH--CLRNVDAKYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQR 237
Query: 571 RMDQ-INILICTPGRLLQHMDENPL 642
+++ ++++ TPGRL ++EN L
Sbjct: 238 LLNKHPHVVVATPGRLWSVINENNL 262
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 83.0 bits (196), Expect = 4e-17
Identities = 53/171 (30%), Positives = 89/171 (52%), Gaps = 15/171 (8%)
Frame = +1
Query: 208 DDIRTFKDFPLSQKTLNGLKANNYVTPTEIQKQAIGYALQGKDILGAAKTGSGKTLAFLI 387
+ + F PL+ L +K + Y PT +QK +I G+D++ A+TGSGKT FL
Sbjct: 166 EPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLF 225
Query: 388 PILENLFCKKWTRLD-----GVG---------ALVISPTRELAYQIYETLRKIGHFHDFS 525
PIL F K + G+G L+++PTREL QI+E RK +
Sbjct: 226 PILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVR 285
Query: 526 AGLIIGGQNLKFERKRMDQ-INILICTPGRLLQHMDENPLFDCSHLQIVVL 675
+ GG +++ + +++DQ ++L TPGRL+ +D + ++++ +VL
Sbjct: 286 PCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRI-SLANIKFLVL 335
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 82.6 bits (195), Expect = 5e-17
Identities = 50/146 (34%), Positives = 77/146 (52%), Gaps = 2/146 (1%)
Frame = +1
Query: 205 PDDIRTFKDFPLSQKTLNGLKANNYVTPTEIQKQAIGYALQGKDILGAAKTGSGKTLAFL 384
P + TF++ L +K + PT IQ+QA A+ G+D++G + TGSGKTL++
Sbjct: 118 PKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYC 177
Query: 385 IPILENLFCKK-WTRLDGVGALVISPTRELAYQIYETLRKIGHFHDFSAGLIIGGQNLKF 561
+P + ++ + + DG LV++PTRELA QI + K G + GG
Sbjct: 178 LPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGP 237
Query: 562 E-RKRMDQINILICTPGRLLQHMDEN 636
+ R + + I I TPGRLL +D N
Sbjct: 238 QIRDLIRGVEICIATPGRLLDMLDSN 263
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 77.0 bits (181), Expect = 2e-15
Identities = 43/135 (31%), Positives = 77/135 (57%), Gaps = 1/135 (0%)
Frame = +1
Query: 214 IRTFKDFPLSQKTLNGLKANNYVTPTEIQKQAIGYALQGKDILGAAKTGSGKTLAFLIPI 393
+ +F++ L + L G+ A Y TP+ +Q +AI +G+D++ A++G+GKT F I I
Sbjct: 20 VSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGI 79
Query: 394 LENLFCKKWTRLDGVGALVISPTRELAYQIYETLRKIGHFHDFSAGLIIGGQNLKFERKR 573
L+++ + AL++SPTRELA QI + +G + IGG ++ + K+
Sbjct: 80 LQSIDLS----VRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKK 135
Query: 574 MDQ-INILICTPGRL 615
+D +++ TPGR+
Sbjct: 136 LDYGQHVVSGTPGRV 150
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 75.4 bits (177), Expect = 7e-15
Identities = 47/151 (31%), Positives = 82/151 (54%), Gaps = 2/151 (1%)
Frame = +1
Query: 169 IKYLQGQYEKINPDD-IRTFKDFPLSQKTLNGLKANNYVTPTEIQKQAIGYALQGKDILG 345
+ L+ + N D+ I TF D L + L G+ A + P+ IQ++AI L +D+L
Sbjct: 2 VDQLEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLA 61
Query: 346 AAKTGSGKTLAFLIPILENLFCKKWTRLDGVGALVISPTRELAYQIYETLRKIGHFHDFS 525
A++G+GKT F I +L+ + T L AL+++PTRELA QI + + +G +
Sbjct: 62 QAQSGTGKTATFSISVLQKID----TSLKQCQALILAPTRELAQQIQKVVVALGDLMNVE 117
Query: 526 AGLIIGGQNLKFERKRMDQ-INILICTPGRL 615
IGG ++ + + +++++ TPGR+
Sbjct: 118 CHACIGGTLVRDDMAALQAGVHVVVGTPGRV 148
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 72.5 bits (170), Expect = 5e-14
Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 11/163 (6%)
Frame = +1
Query: 220 TFKDFPLSQKTLNGLKANNYVTPTEIQKQAIGYALQGKDILGAAKTGSGKTLAFLIPILE 399
+F+ + + N + A + T +Q AI L+ KD++ A TGSGKTLA+L+P +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 400 NLFCKKWTRLDGVGALVISPTRELAYQIYETLRKIGHFHDFS--------AGLIIGGQNL 555
+ ++ T G+GAL+++PTRELA QI+ +++ + S A + IGG+
Sbjct: 62 KV-TRRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGT 120
Query: 556 ---KFERKRMDQINILICTPGRLLQHMDENPLFDCSHLQIVVL 675
R +++I TPGRL + + HL+I++L
Sbjct: 121 LTNDLASFREKNPSVVIGTPGRLNEMLSH---ISSKHLEILIL 160
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 72.1 bits (169), Expect = 7e-14
Identities = 48/139 (34%), Positives = 74/139 (53%), Gaps = 5/139 (3%)
Frame = +1
Query: 238 LSQKTLNGLKANNYVTPTEIQKQAIGYALQGKD-ILGAAKTGSGKTLAFLIPILENLFCK 414
LS N L + T +Q++ + ++ + AKTG+GKTLAFL+ +++
Sbjct: 45 LSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKG 104
Query: 415 KWTRLDG--VGALVISPTRELAYQIYETLRKIGHFHDFSAGLIIGGQNLKFERK--RMDQ 582
K RL+ + ++++SPTRELA QI+E RK+ + IGG + E R
Sbjct: 105 K-PRLNSSKIHSVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGN 163
Query: 583 INILICTPGRLLQHMDENP 639
N+LI TPGRL H+ +NP
Sbjct: 164 ANLLIATPGRLEDHL-QNP 181
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 68.1 bits (159), Expect = 1e-12
Identities = 45/137 (32%), Positives = 73/137 (53%), Gaps = 6/137 (4%)
Frame = +1
Query: 223 FKDFPLSQKTLNGLKANNYVTPTEIQKQAIGYALQGKDILGAAKTGSGKTLAFLIPILEN 402
F+DF L + L + + + P+E+Q+ I ++ G D+L AK+G GKT F++ L+
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112
Query: 403 LFCKKWTRLDG-VGALVISPTRELAYQI-YETLRKIGHFHDFSAGLIIGGQNLKFE---- 564
+ +DG V LV+ TRELA+QI E R + D + GG N+K +
Sbjct: 113 I-----EPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAF 167
Query: 565 RKRMDQINILICTPGRL 615
+ + +I++ TPGRL
Sbjct: 168 KDKSKSPHIVVATPGRL 184
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 66.1 bits (154), Expect = 4e-12
Identities = 50/179 (27%), Positives = 89/179 (49%), Gaps = 20/179 (11%)
Frame = +1
Query: 199 INPDDIRTFKDFPLSQKTLNGLKANNYVTPTEIQKQAIGYALQ----------GKDILGA 348
++P+ F +S K + L+ N +Q + LQ G D+ +
Sbjct: 120 VDPNTTVEFSSLNISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGDVCVS 179
Query: 349 AKTGSGKTLAFLIPILENLFCKKWTRLDGVGALVISPTRELAYQIYETLRKIGHFHDFSA 528
A TGSGKTL+++IPI++ C + + +VI PTREL Q+ +T ++ A
Sbjct: 180 AATGSGKTLSYVIPIVQ---CLSHRTVPRLRCVVIVPTRELTVQVAKTF----EYYMSGA 232
Query: 529 GLII----GGQNLKFERKRMD------QINILICTPGRLLQHMDENPLFDCSHLQIVVL 675
GL + G ++L+ E +++ +I++L+ TPGRL+ H+ + F HL+ +V+
Sbjct: 233 GLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVI 291
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 63.7 bits (148), Expect = 2e-11
Identities = 51/152 (33%), Positives = 75/152 (49%), Gaps = 3/152 (1%)
Frame = +1
Query: 202 NPDDIRTFKDFPLSQKTLNGLKANNYVTPTEIQKQAIGYALQGKDILGAAKTGSGKTLAF 381
NP D ++FP N LK N T IQ+ AI +D+L A TGSGKT+A+
Sbjct: 44 NPVD--PIEEFPEGILCEN-LKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAY 100
Query: 382 LIPILENLFCKKWTRLDGVGALVISPTRELAYQIYETLRKIGHFHDFSAGLIIGGQNLKF 561
L PIL+ L + G A++++PTREL QIY K+ F + + N K
Sbjct: 101 LFPILQKL---QLHVPGGYRAIIVAPTRELCEQIYRQAEKLS-FGTSLKIIELSKSNEKI 156
Query: 562 ERKR---MDQINILICTPGRLLQHMDENPLFD 648
+ K ++ ++ I TP RL+Q + F+
Sbjct: 157 QEKAPKLREKYDMCIGTPMRLVQAIQTGLSFE 188
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 56.4 bits (130), Expect = 4e-09
Identities = 38/156 (24%), Positives = 85/156 (54%), Gaps = 2/156 (1%)
Frame = +1
Query: 214 IRTFKDFPLSQKTLNGLKANNYVTPTEIQKQAIGYALQG--KDILGAAKTGSGKTLAFLI 387
+++F++ L + L G+ + + P++IQ++A+ L ++++G +++G+GKT AF +
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 388 PILENLFCKKWTRLDGVGALVISPTRELAYQIYETLRKIGHFHDFSAGLIIGGQNLKFER 567
+L + + A+ ++P+RELA QI + + ++G + + G ++ +
Sbjct: 173 TMLSRVDAS----VPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTA--FGIKDSVPKG 226
Query: 568 KRMDQINILICTPGRLLQHMDENPLFDCSHLQIVVL 675
++D I+I TPG ++ M L D +++ VL
Sbjct: 227 AKID-AQIVIGTPGTVMDLMKRRQL-DARDIKVFVL 260
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 39.9 bits (89), Expect = 3e-04
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +1
Query: 235 PLSQKTLNGLKANNYVTPT-EIQKQAIGYALQGKDILGAAKTGSGKTLAFLIPILENL 405
PLSQ+ +N L + + T + Q AI + G ++ + T SGK+L + IPIL++L
Sbjct: 294 PLSQELINALYTSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL 351
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 34.3 bits (75), Expect = 0.016
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Frame = +1
Query: 232 FPLSQKTLNGLKANNYVTP-TEIQKQAIGYALQGKDILGAAKTGSGKTLAFLIP-ILENL 405
+P S++ L LK ++ + Q +AI L GKD+ TG GK+L + +P ++E
Sbjct: 501 YPWSKEVLGCLKHKFHLKGFRKNQLEAINGTLSGKDVFILMPTGGGKSLCYQLPAVIEGG 560
Query: 406 FCKKWTRLDGVGALVISPTRELAYQIYETLRKI 504
+ GV LVISP L + LRK+
Sbjct: 561 ASR------GV-TLVISPLLSLMQDQLDHLRKL 586
>SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit
Tfa2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 285
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 166 AIKYLQGQYEKINPDDIRTFKDFPLSQKTLNGLKANNYV 282
A++YL+ + E ++I ++ PL+ LN LK NN +
Sbjct: 86 AVEYLKERNEPKTAEEIASYLSTPLTPMLLNLLKKNNRI 124
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +1
Query: 298 QKQAIGYALQGK-DILGAAKTGSGKTLAFLIPIL 396
Q Q++ ++L + +++ TG GK+L+FLIP L
Sbjct: 1195 QFQSVYFSLLNRMNLITVLPTGGGKSLSFLIPAL 1228
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +1
Query: 298 QKQAIGYALQGK-DILGAAKTGSGKTLAFLIPIL 396
Q Q++ ++L + +++ TG GK+L+FLIP L
Sbjct: 1195 QFQSVYFSLLNRMNLITVLPTGGGKSLSFLIPAL 1228
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 26.6 bits (56), Expect = 3.3
Identities = 16/70 (22%), Positives = 31/70 (44%)
Frame = -1
Query: 221 VLMSSGFIFSYCPCKYLIAASSSKLFFLRGLYNKTFLRPR*AFGSFSSCFIVKLRFSNIK 42
+++ S F +C YL+ SSS + + + NKT L + S + N
Sbjct: 671 IMIESKASFLHCNNAYLLCISSSGMVYAWNVVNKTALFTANSLAPILSRVSNNVTIENNS 730
Query: 41 SNNPHGLVVT 12
++ PH ++ +
Sbjct: 731 TDIPHVVIAS 740
>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
1|||Manual
Length = 408
Score = 26.2 bits (55), Expect = 4.4
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Frame = -3
Query: 225 KSSYVIRIYLFILPL*IFDCGIFLKAF-FLTW----FIQQNFLTPSLSFWVFFF 79
K + ++LF L I G FL + FL ++ + LTP+L W +FF
Sbjct: 203 KFRQIFVVFLFYLAGLIITSGFFLNSLSFLKIPFRVYLDSHDLTPNLGLWWYFF 256
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 26.2 bits (55), Expect = 4.4
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +1
Query: 253 LNGLKANNYVTPTE-IQKQAIGY---ALQGKDILGAAKTGSGKTLAFLIPILENLFCKKW 420
LN +++N VTP +Q + Y A ++ G A+ + + +FL+ +L+ +W
Sbjct: 145 LNSMQSNAPVTPMRFLQSLRMEYPQFAEMSRETGGYAQQDAEECWSFLLSVLQRSLSSEW 204
Query: 421 TRLDGVGALV 450
+ + G L+
Sbjct: 205 VQKNMAGKLL 214
>SPCC61.05 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 469
Score = 26.2 bits (55), Expect = 4.4
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 7/37 (18%)
Frame = -3
Query: 162 IFLKAFFLTWFIQ----QNFLTP---SLSFWVFFFLF 73
+FL LTW ++ Q+ + P SL+FWVF F+F
Sbjct: 208 MFLGFITLTWLLRCIKSQSGVQPAQISLAFWVFIFVF 244
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 4.4
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 289 TEIQKQAIGYALQGKDILGAAKTGSGKTLAFLIPILENLFCKKWTRLDGVGALVISP 459
++I IGY +L AAK+ T+ P L N K+W R+ GA+ +P
Sbjct: 76 SQIATIPIGY--NNPTLLKAAKSDEVATILMNRPALGNYPPKEWARVAYEGAIKYAP 130
>SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 980
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 169 IKYLQGQYEKINPDDIRTFKD-FPLSQKTLNGLKANNYVTPTEIQKQAIGYALQGKDIL 342
I ++GQY +NP IR++ D F + + L + +N + ++ A+G + G +L
Sbjct: 848 ITKIEGQYYTVNPMAIRSYLDVFGENVRVLIPIDSNEF---GKVMLVAVGAMMVGSTVL 903
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 307 AIGYALQGKDILGAAKTGSGKTLAFLI 387
AIG LQ I AAK GS KT+ +L+
Sbjct: 62 AIGGDLQAAPIHWAAKRGSVKTVHYLV 88
>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 757
Score = 25.4 bits (53), Expect = 7.6
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Frame = +1
Query: 148 SFEEDAAIKYLQGQYEKINPDDIRTFKDFPLSQKTLNGL---KANNYVTPTEIQKQAIGY 318
SF+ +I Q Y +P D +++ PL K + L K +++ ++ +G+
Sbjct: 591 SFDSGVSILSCQNFYNIFHPTDPISYRVEPLVVKQMARLKPQKISHFRPHQDLSSSGVGH 650
Query: 319 ALQG--KDILGAAKTGSGKTL 375
+ G ++L ++G TL
Sbjct: 651 KIAGGALNVLSGLRSGIANTL 671
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 556 KFERKRMDQINILICTPGRLLQHMDENPLFDC 651
+F ++ D+I + PG+ L H D N F C
Sbjct: 3301 EFHHQKFDEIEV----PGQYLLHKDNNNSFSC 3328
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 25.4 bits (53), Expect = 7.6
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +1
Query: 415 KWTRLDGVGALVISPT--RELAYQIYETLRKIGHFHDFSAGLIIGGQNLKFERKRMDQIN 588
KWT GV L +SP ELA QI + H S + G NL E + + +
Sbjct: 392 KWTSQLGV--LYLSPLVGEELASQISSKIYDDLHAFYKSLNSVDGISNLTIEEEELVNTD 449
Query: 589 ILICTPGRLL 618
+ GRLL
Sbjct: 450 FSLAYGGRLL 459
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,984,288
Number of Sequences: 5004
Number of extensions: 65428
Number of successful extensions: 224
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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