Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23e09
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       84   1e-18
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    25   0.88 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   6.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   6.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   6.2  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 84.2 bits (199), Expect = 1e-18
 Identities = 50/163 (30%), Positives = 86/163 (52%), Gaps = 6/163 (3%)
 Frame = +1

Query: 205 PDDIRTFKDFPLSQKTLNGLKANNYVTPTEIQKQAIGYALQGKDILGAAKTGSGKTLAFL 384
           P  I +F+   L    L+ +K + Y  PT +QK A+   + G+D++  A+TGSGKT AF 
Sbjct: 192 PQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFA 251

Query: 385 IPILENLFCKK-----WTRLDGVGALVISPTRELAYQIYETLRKIGHFHDFSAGLIIGGQ 549
           +PI+  L  +       +       +++SPTREL  QI++ + K          +  GG 
Sbjct: 252 VPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGT 311

Query: 550 NLKFERKRMDQ-INILICTPGRLLQHMDENPLFDCSHLQIVVL 675
           ++  +R ++    +IL+ TPGRLL  +++  +   S +Q +VL
Sbjct: 312 SVMHQRGKLSAGCHILVATPGRLLDFVEKGRV-KFSSVQFLVL 353


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 309 YRICTARKRYPWRS*NRFWQNLSILNTHIR 398
           Y   + R   PW S N +W   + +N + R
Sbjct: 87  YFFMSMRSELPWGSCNNYWNTKNCVNPYDR 116


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -1

Query: 293 SVGVT*LFALSPFRVFWERGKSLKVLMSSG 204
           SVGV+   +L  F+V   R +++++ +++G
Sbjct: 176 SVGVSNEVSLPQFKVLGHRQRAMEISLTTG 205


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -1

Query: 293 SVGVT*LFALSPFRVFWERGKSLKVLMSSG 204
           SVGV+   +L  F+V   R +++++ +++G
Sbjct: 115 SVGVSNEVSLPQFKVLGHRQRAMEISLTTG 144


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/46 (21%), Positives = 22/46 (47%)
 Frame = +1

Query: 175 YLQGQYEKINPDDIRTFKDFPLSQKTLNGLKANNYVTPTEIQKQAI 312
           Y Q +YE+ + +D++   + P   + ++  K  +    T +  Q I
Sbjct: 344 YFQNEYEQPSEEDLKRITNQPSEGEDISDYKFRHITEITILTVQLI 389


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,684
Number of Sequences: 438
Number of extensions: 4321
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)