Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc23e06
         (776 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9BYX4 Cluster: Interferon-induced helicase C domain-co...    38   0.37 
UniRef50_Q7R9L7 Cluster: Protein phosphatase 2C, putative; n=7; ...    35   2.6  
UniRef50_Q31A95 Cluster: Putative uncharacterized protein precur...    28   4.1  
UniRef50_UPI00006CD9FE Cluster: hypothetical protein TTHERM_0039...    33   8.0  
UniRef50_Q6NYJ3 Cluster: LOC407707 protein; n=5; Danio rerio|Rep...    33   8.0  
UniRef50_Q7RE70 Cluster: Putative uncharacterized protein PY0519...    33   8.0  
UniRef50_Q61JB5 Cluster: Putative uncharacterized protein CBG098...    33   8.0  
UniRef50_Q16TZ9 Cluster: Putative uncharacterized protein; n=1; ...    33   8.0  

>UniRef50_Q9BYX4 Cluster: Interferon-induced helicase C
           domain-containing protein 1; n=18; Theria|Rep:
           Interferon-induced helicase C domain-containing protein
           1 - Homo sapiens (Human)
          Length = 1025

 Score = 37.5 bits (83), Expect = 0.37
 Identities = 29/98 (29%), Positives = 46/98 (46%)
 Frame = +2

Query: 284 PNSFKILFTIT*YSYYCSINHIPAAS**TSQIHQMKVPAVKKAENQRSAREAIHMVHLQL 463
           P   K+L  +T    YC ++  P +   T    Q  +   KKA  + + +E +   HL+ 
Sbjct: 549 PFKEKLLEIMTRIQTYCQMS--PMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRK 606

Query: 464 HHMDLQYNQKMNLIQQMNIIQTSVQNEEKPK*KIAQIE 577
           ++  LQ N  + +I     ++T   NEEK K K A IE
Sbjct: 607 YNEALQINDTIRMIDAYTHLET-FYNEEKDK-KFAVIE 642


>UniRef50_Q7R9L7 Cluster: Protein phosphatase 2C, putative; n=7;
           Plasmodium (Vinckeia)|Rep: Protein phosphatase 2C,
           putative - Plasmodium yoelii yoelii
          Length = 798

 Score = 34.7 bits (76), Expect = 2.6
 Identities = 24/111 (21%), Positives = 48/111 (43%)
 Frame = +1

Query: 424 KCSRSNTYGASSTTSHGSAIQSEDEPDTANEYHSNLSTKRRKTEIENSTDRNVRLXXXXX 603
           KC        + T++ G  I++E + D  N   + ++TKR K ++ N TD N++      
Sbjct: 302 KCKSEVNSVDTDTSNLGQDIKNEIKED--NNGSTEINTKRLKKDMNNETDNNIKEEDAIN 359

Query: 604 XXXXXXXPGEHFEDYRPVFNDNDEDQEENALRPSFQNSDTKFNQSVNDMND 756
                         Y  + +  +  + E+ L+ ++ NS+   N  +N  +D
Sbjct: 360 NNIKTEDVKPSALTYDNLKSLGEMTEPEDKLKGNYSNSNDVINDILNSCDD 410


>UniRef50_Q31A95 Cluster: Putative uncharacterized protein
           precursor; n=1; Prochlorococcus marinus str. MIT
           9312|Rep: Putative uncharacterized protein precursor -
           Prochlorococcus marinus (strain MIT 9312)
          Length = 288

 Score = 27.9 bits (59), Expect(2) = 4.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 667 NDEDQEENALRPSFQNSDTKFNQSVND 747
           N ED+++ +L  S  NSD  F+ S+ D
Sbjct: 147 NKEDEDKESLEDSKPNSDRAFSDSIKD 173



 Score = 25.0 bits (52), Expect(2) = 4.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 640 EDYRPVFNDNDEDQEEN 690
           ED+ P+ ++ DED EE+
Sbjct: 115 EDFPPILSEEDEDAEED 131


>UniRef50_UPI00006CD9FE Cluster: hypothetical protein
           TTHERM_00399440; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00399440 - Tetrahymena
           thermophila SB210
          Length = 1317

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +1

Query: 430 SRSNTYGASSTTSHGSAIQSEDEPDTANEYHSNLSTKRRKTEIENSTDRN 579
           + SN  G+ S  S+    +S DE  ++   HS    +RR++  ENS DRN
Sbjct: 570 NNSNDSGSRSR-SNSMRNRSNDENRSSKSNHSEYGDERRRSSAENSIDRN 618


>UniRef50_Q6NYJ3 Cluster: LOC407707 protein; n=5; Danio rerio|Rep:
           LOC407707 protein - Danio rerio (Zebrafish) (Brachydanio
           rerio)
          Length = 640

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 19/34 (55%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = +1

Query: 490 EDEPDTANEYHSNLSTKRRKTEIENSTD-RNVRL 588
           ED PD +NE HS+L  KRRKT   ++TD R+ RL
Sbjct: 301 EDAPDASNE-HSSLKKKRRKTCKTSTTDSRSSRL 333


>UniRef50_Q7RE70 Cluster: Putative uncharacterized protein PY05197;
           n=3; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY05197 - Plasmodium yoelii yoelii
          Length = 707

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 16/40 (40%), Positives = 28/40 (70%), Gaps = 3/40 (7%)
 Frame = +1

Query: 643 DYRPVFNDNDEDQE--ENALRPSFQNSDTKF-NQSVNDMN 753
           DY  + +++DED    EN  + SF+N D+K+ N++VND++
Sbjct: 270 DYNIISSNSDEDNMNVENKKKNSFKNEDSKYINENVNDVD 309


>UniRef50_Q61JB5 Cluster: Putative uncharacterized protein CBG09858;
           n=1; Caenorhabditis briggsae|Rep: Putative
           uncharacterized protein CBG09858 - Caenorhabditis
           briggsae
          Length = 484

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
 Frame = +2

Query: 368 TSQIHQMKVP-AVKKAENQRSAREAIHMVHLQLHHMDLQYNQ-KMNLIQQ-MNIIQTSVQ 538
           T  I   KVP  V+  ++ R  +E +H+V+ +  H +L Y Q +M+ +Q+ +N  QT  Q
Sbjct: 366 TGPITPPKVPDGVRPPDSVRIVQERMHLVNAERLHHELMYRQFEMDNLQRILNKEQTKSQ 425

Query: 539 NEE 547
            EE
Sbjct: 426 TEE 428


>UniRef50_Q16TZ9 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 1193

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 655 VFNDNDEDQEENALRPSFQNSDTKFNQSVNDMNDPEY 765
           + ND+D+D EEN L+ S +  D   N   ++ +D EY
Sbjct: 597 IANDDDDDDEENNLKISIEEDDQDENGRYSNHSDQEY 633


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 686,909,677
Number of Sequences: 1657284
Number of extensions: 12474705
Number of successful extensions: 38650
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 35702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38564
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65438977305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)